BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA02RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1132 0.0
>3x_Contig1807
Length = 66587
Score = 1132 bits (571), Expect = 0.0
Identities = 666/690 (96%), Gaps = 6/690 (0%)
Strand = Plus / Plus
Query: 50 gagaccaag-tggtttcttcaagagagttgagctaaaataaaacatctccacaacaatat 108
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59131 gagaccaaggtggtttcttcaagagagttgagctaaaataaaacatctccacaacaatat 59190
Query: 109 gaggtcactatcaatgctcaattctttttatcttggtgtctggttaccagtcacccatat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59191 gaggtcactatcaatgctcaattctttttatcttggtgtctggttaccagtcacccatat 59250
Query: 169 gtaagaccttgctctctttccatatagtcaattttatgtttagtgaaataacgaattata 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59251 gtaagaccttgctctctttccatatagtcaattttatgtttagtgaaataacgaattata 59310
Query: 229 aactgattgaatcataccgcacagtcatcaccttctattcttcgttgcattgtttcgttc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59311 aactgattgaatcataccgcacagtcatcaccttctattcttcgttgcattgtttcgttc 59370
Query: 289 cacttcagagtattttagtaatgaacccagacagataacccctgatcataacaattatta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59371 cacttcagagtattttagtaatgaacccagacagataacccctgatcataacaattatta 59430
Query: 349 agcttgtgttatcttaagagccgaatcgcagctgatgataggttcttgcgtgtgttgtag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59431 agcttgtgttatcttaagagccgaatcgcagctgatgataggttcttgcgtgtgttgtag 59490
Query: 409 attatcctggaatgtatgcttggcctatgtaactcttccacataaatatgatctaaaaaa 468
|||||||||||||||||||||||||||||||||||| ||||| ||| | || | ||||||
Sbjct: 59491 attatcctggaatgtatgcttggcctatgtaactctgccacagaaagaggagcgaaaaaa 59550
Query: 469 taacactaaaagtatatcatgcgagatattcaaccttatacctatctatgactataataa 528
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59551 taacacgaaaagtatatcatgcgagatattcaaccttatacctatctatgactataataa 59610
Query: 529 gtagatgcaacatctcccatatgcatatttcatagccagaaccatgagtgtcttcctatt 588
||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct: 59611 gtagatgcaacatctcccaaatgcaaatttcaaagccagaaccatgagtgtcttcctatt 59670
Query: 589 gaagaattaactgatctaactctgatgntagagcgttgcaatgtgccttgttcgctagta 648
||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct: 59671 gaagaattaactgatctaactctgatgttagagcgttgcaatgtgctttgtccgctagta 59730
Query: 649 -tattttgcatcttttt-aagcgaat-atgttcggtttacaa-tgtgaagg-gaagaatg 703
|||||||||||||||| |||||||| | ||||||||||||| |||||||| ||||| |
Sbjct: 59731 ttattttgcatctttttaaagcgaataaggttcggtttacaattgtgaaggtgaagatgg 59790
Query: 704 ccgaatttttcttacttcacgtttgggtta 733
||| ||||||||||||||||| ||||||||
Sbjct: 59791 ccgtatttttcttacttcacggttgggtta 59820
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7284
Number of Sequences: 1807
Number of extensions: 7284
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)