BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC41ZA03FM1.SCF screened BAC_end
         (917 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1330                                                        1120   0.0  

>3x_Contig1330 
          Length = 7703

 Score = 1120 bits (565), Expect = 0.0
 Identities = 627/642 (97%), Gaps = 5/642 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   atatcaaagctcgatacgtctctttggaaagtgctgtttcaatattttagattgcagttg 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4532 atatcaaagctcgatacgtctctttggaaagtgctgtttcaatattttagattgcagttg 4591

                                                                        
Query: 147  attccaggcaatgaaaggaagttggctgattatagagatattctgttcgtgatcaaaaac 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4592 attccaggcaatgaaaggaagttggctgattatagagatattctgttcgtgatcaaaaac 4651

                                                                        
Query: 207  catgaacaattccatttcgttgtgatgtgttcgtttattaattactgtctcgatgaaggg 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4652 catgaacaattccatttcgttgtgatgtgttcgtttattaattactgtctcgatgaaggg 4711

                                                                        
Query: 267  atcagcataccagctgatatgtgggtttattttagtgaaatggacacagctcatgtcaaa 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4712 atcagcataccagctgatatgtgggtttattttagtgaaatggacacagctcatgtcaaa 4771

                                                                        
Query: 327  cttaaaatatggaaaatactcttggagctcttagttttaatcttcaaggacattaacatt 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4772 cttaaaatatggaaaatactcttggagctcttagttttaatcttcaaggacattaacatt 4831

                                                                        
Query: 387  actgataagctcacagaactgaaatccttctttgacaacaataaagataaaatcgatagt 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4832 actgataagctcacagaactgaaatccttctttgacaacaataaagataaaatcgatagt 4891

                                                                        
Query: 447  ccattggaatcaattcacctttttgacactgtatcattgaagcttgactttcctgtattc 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4892 ccattggaatcaattcacctttttgacactgtatcattgaagcttgactttcctgtattc 4951

                                                                        
Query: 507  ggatacaaagatgtaaaaaatttgctattattctttcaaagtgtcagttatttaccgaat 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4952 ggatacaaagatgtaaaaaatttgctattattctttcaaagtgtcagttatttaccgaat 5011

                                                                        
Query: 567  tgtttcgancaaagatcaaacttctctgntaagtttcttaccgaanactatatcaacaac 626
            ||||||||  |||||||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct: 5012 tgtttcgacaaaagatcaaacttctctgttaag-ttcttaccgaaaactatatcaacaac 5070

                                                                        
Query: 627  tggaaaagctcctttcctcctaggatgaaaaatggtccactcttcaaatggaatcttttg 686
            ||| ||||||||||||||||| ||||||||||| || |||||| ||||| ||||  ||||
Sbjct: 5071 tgg-aaagctcctttcctccttggatgaaaaat-gttcactctccaaattgaattctttg 5128

                                                      
Query: 687  cacaaattttatcacactttgtttggacctgggtgaagttct 728
            ||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 5129 cacaaattttatcacactttg-ttggacct-ggtgaagttct 5168


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7225
Number of Sequences: 1807
Number of extensions: 7225
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)