BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA03RM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1625 1344 0.0
>3x_Contig1625
Length = 13618
Score = 1344 bits (678), Expect = 0.0
Identities = 766/788 (97%), Gaps = 7/788 (0%)
Strand = Plus / Plus
Query: 46 gctttcttatagtgttccatcttggtatagaaagaaatgactgtcgtatagttctttctg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6489 gctttcttatagtgttccatcttggtatagaaagaaatgactgtcgtatagttctttctg 6548
Query: 106 ttaggttgcatatcatacgtcgaggtgaatttctttaaaaaaaagtccatatactcccag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6549 ttaggttgcatatcatacgtcgaggtgaatttctttaaaaaaaagtccatatactcccag 6608
Query: 166 ctcatggcttttgaagctgcaaatatacaagcatttagcatatactgtgttggctggaaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6609 ctcatggcttttgaagctgcaaatatacaagcatttagcatatactgtgttggctggaaa 6668
Query: 226 cttttcttcgataatgtagcatccattctctctgttaactctcgaagtttaccacatact 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6669 cttttcttcgataatgtagcatccattctctctgttaactctcgaagtttaccacatact 6728
Query: 286 tccaatttgccctgtgctgatggtgatgtaacccgagaaaaagacaacatgagatgctcg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6729 tccaatttgccctgtgctgatggtgatgtaacccgagaaaaagacaacatgagatgctcg 6788
Query: 346 tataagttaccatttaaccgcgaggagtcattcccaacgctttccattatcatctcatcc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6789 tataagttaccatttaaccgcgaggagtcattcccaacgctttccattatcatctcatcc 6848
Query: 406 aattgggataagctcgtaaaggaaagtttatcgaatttcgaaagaatcttggaataaata 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6849 aattgggataagctcgtaaaggaaagtttatcgaatttcgaaagaatcttggaataaata 6908
Query: 466 aattggattcctaaaccctttagtctctgttctgaatggtatagttctgttactatcgga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6909 aattggattcctaaaccctttagtctctgttctgaatggtatagttctgttactatcgga 6968
Query: 526 ttaaaatccctattcctcttatcaaacaaacacctcataatgatgtccctgtcctttatc 585
||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||
Sbjct: 6969 ttaaaatccctattcctcttatcaaacaaacacctcaaaatgaggtccttgtcctttatc 7028
Query: 586 ctctctgataatcgctcgggtagtaacgatgtatcagctttattctgatacanaaagagt 645
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 7029 ctctctgataatcgctcgggtagtaacgatgtatcagcttta-tctgataacaaaagagt 7087
Query: 646 tgaaagattctgntctgccccagggcccgctaccttatcgntcaatgaacnntaaat-ac 704
|||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct: 7088 tgaaagattctgttctgccccagggcccgctaccttatcgttcaatgaacttaaaataac 7147
Query: 705 tncagcatcgctgtc-aaatcatgcatctcgggatctaccgattttgtctcctcctcttc 763
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7148 tccagcatcgctgtcaaaatcatgcatctcgggatctaccgattttgtctcctcctcttc 7207
Query: 764 tat-acatgcttacgc-ttagctcatcatgttacttgatctgttctcg-agatttct-gt 819
||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||
Sbjct: 7208 tataacatgcttacgctttagctcatcagtgtacttgatctgttctcgaagatttctggt 7267
Query: 820 gaactctt 827
||||||||
Sbjct: 7268 gaactctt 7275
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6191
Number of Sequences: 1807
Number of extensions: 6191
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)