BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA04RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig296 829 0.0
>3x_Contig296
Length = 1333
Score = 829 bits (418), Expect = 0.0
Identities = 418/418 (100%)
Strand = Plus / Plus
Query: 43 gcttcctcacttgcaaattgtcatgttccatatatgatatgatgacacgcctaatgaact 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 gcttcctcacttgcaaattgtcatgttccatatatgatatgatgacacgcctaatgaact 975
Query: 103 ctgtgagagaatatttgggttttatgtcggaaagcatccttaaagccttcgtaagtataa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 ctgtgagagaatatttgggttttatgtcggaaagcatccttaaagccttcgtaagtataa 1035
Query: 163 cagcatcaaaaatatcgttattggcttcaccagttttcttgaagagtgattgatctctat 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 cagcatcaaaaatatcgttattggcttcaccagttttcttgaagagtgattgatctctat 1095
Query: 223 aatttcttgcggtctctgcggagaatggtttcataggggtaggggatcccggtggtctga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 aatttcttgcggtctctgcggagaatggtttcataggggtaggggatcccggtggtctga 1155
Query: 283 acttctcaccagatagtacaagacatattatattgagtagcttttcattgattgttccct 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1156 acttctcaccagatagtacaagacatattatattgagtagcttttcattgattgttccct 1215
Query: 343 ccaacgaagggattttctcgcatacaatcagtaaggtctcttgcatgtgatcacttaaag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1216 ccaacgaagggattttctcgcatacaatcagtaaggtctcttgcatgtgatcacttaaag 1275
Query: 403 ggcatgctaacatatattcaagtagtcctctgtttagatattttgctaataatggacg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1276 ggcatgctaacatatattcaagtagtcctctgtttagatattttgctaataatggacg 1333
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5894
Number of Sequences: 1807
Number of extensions: 5894
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)