BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA05FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig185 969 0.0
>3x_Contig185
Length = 1072
Score = 969 bits (489), Expect = 0.0
Identities = 503/505 (99%), Gaps = 2/505 (0%)
Strand = Plus / Plus
Query: 88 taagcaaagcgagaatctttcactggattacagagatatgatggggaaacatactccgtg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 taagcaaagcgagaatctttcactggattacagagatatgatggggaaacatactccgtg 156
Query: 148 cgggctgcaaagagtgaatagggtaaaaaaaaagaactcaattcaacggagttgagttcg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cgggctgcaaagagtgaatagggtaaaaaaaaagaactcaattcaacggagttgagttcg 216
Query: 208 aactttaaaaatttgaccattagcccctgtgatccaatagcatgtagcgtgtaaactccg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aactttaaaaatttgaccattagcccctgtgatccaatagcatgtagcgtgtaaactccg 276
Query: 268 taggataatggtctaatggttttcgacccggtcattccagtgtggatcttttacaaaaca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taggataatggtctaatggttttcgacccggtcattccagtgtggatcttttacaaaaca 336
Query: 328 gcagttgtttccagggatgttgagttacgttgtatctttcgataatatccctataattct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcagttgtttccagggatgttgagttacgttgtatctttcgataatatccctataattct 396
Query: 388 cggtatgtatttcattttttttttgatcattcatttttttccttcattgtttacgttatt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cggtatgtatttcattttttttttgatcattcatttttttccttcattgtttacgttatt 456
Query: 448 ttgactgaggaaaacaactggctcaaaaatgagtgacaagatcattcaaattcgttagta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttgactgaggaaaacaactggctcaaaaatgagtgacaagatcattcaaattcgttagta 516
Query: 508 gtggtgataggtttcagtttattgttttgtaaaaaagagacttgtttcaattgaatataa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtggtgataggtttcagtttattgttttgtaaaaaagagacttgtttcaattgaatataa 576
Query: 568 aaggggggcctgt-atttctttaaa 591
|| |||||||||| |||||||||||
Sbjct: 577 aa-gggggcctgtaatttctttaaa 600
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,223
Number of Sequences: 1807
Number of extensions: 16223
Number of successful extensions: 207
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)