BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA05RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1399 1074 0.0
3x_Contig1302 365 e-100
3x_Contig1566 186 5e-47
>3x_Contig1399
Length = 7157
Score = 1074 bits (542), Expect = 0.0
Identities = 545/546 (99%)
Strand = Plus / Minus
Query: 44 gcttctggcaattcagatagaccgatgatcttgattggagacttgaccaaacctctggtg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gcttctggcaattcagatagaccgatgatcttgattggagacttgaccaaacctctggtg 487
Query: 104 aagaagtcggtggcttctctggtgtcagctctgttaccgacgtaagaacccttgatggag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aagaagtcggtggcttctctggtgtcagctctgttaccgacgtaagaacccttgatggag 427
Query: 164 atggacttaacgacgtgggagaagacttcggacttgacgtaagcgtcagctggcaaaccg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atggacttaacgacgtgggagaagacttcggacttgacgtaagcgtcagctggcaaaccg 367
Query: 224 accaagacaacaacaccggttggtctaacgtattcggtagacatggagatagcagcctcg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 accaagacaacaacaccggttggtctaacgtattcggtagacatggagatagcagcctcg 307
Query: 284 gagacggagacgttaatgacaccgtgaggaccaccgttggtagcttcttggatatcggcg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gagacggagacgttaatgacaccgtgaggaccaccgttggtagcttcttggatatcggcg 247
Query: 344 accatgtccttagactttctgaagtcgatgaagacttcaccaccacattgcttgaacaat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 accatgtccttagactttctgaagtcgatgaagacttcaccaccacattgcttgaacaat 187
Query: 404 tcttccttaccatcaccaccgtcaatacctaggactctcaaacccatggccttggcgtat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tcttccttaccatcaccaccgtcaatacctaggactctcaaacccatggccttggcgtat 127
Query: 464 tgcacagcaagggaacctaaaccaccggcagcaccggagatagcaacccattggcctggt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tgcacagcaagggaacctaaaccaccggcagcaccggagatagcaacccattggcctggt 67
Query: 524 ttcaagtcagcggtcttcaaagccttgtaaacggtaacaccggcacacaagattggggcg 583
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ttcaagtcagcggtctacaaagccttgtaaacggtaacaccggcacacaagattggggcg 7
Query: 584 atttca 589
||||||
Sbjct: 6 atttca 1
>3x_Contig1302
Length = 5215
Score = 365 bits (184), Expect = e-100
Identities = 475/572 (83%)
Strand = Plus / Plus
Query: 103 gaagaagtcggtggcttctctggtgtcagctctgttaccgacgtaagaacccttgatgga 162
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1399 gaagaagttgatagcttctctggtgtcagctctgttaccgacgtaagaacccttgatgtt 1458
Query: 163 gatggacttaacgacgtgggagaagacttcggacttgacgtaagcgtcagctggcaaacc 222
|| |||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 1459 aatagacttaacgacgtgggagaagacttcggacttgatgacggcaccagctggcaaacc 1518
Query: 223 gaccaagacaacaacaccggttggtctaacgtattcggtagacatggagatagcagcctc 282
|||||| || ||| ||| |||||||| ||| ||| || || | || ||||| ||
Sbjct: 1519 gaccaatacgacagtaccagttggtctgacgaattgagtggaagcgttcatggcagcttc 1578
Query: 283 ggagacggagacgttaatgacaccgtgaggaccaccgttggtagcttcttggatatcggc 342
|| || |||||||||||||||||||| |||||||||||||| ||||||||| || ||
Sbjct: 1579 agaaacagagacgttaatgacaccgtgtggaccaccgttggtgatttcttggatttcagc 1638
Query: 343 gaccatgtccttagactttctgaagtcgatgaagacttcaccaccacattgcttgaacaa 402
||||||||||| | || |||| || | ||| |||||||||| ||||||||| |||
Sbjct: 1639 aaccatgtccttggttttggtgaaatcaacaaaggcttcaccacccaattgcttgaccaa 1698
Query: 403 ttcttccttaccatcaccaccgtcaatacctaggactctcaaacccatggccttggcgta 462
| |||| | ||||||||||| ||||| | |||||| |||||||||||||||||||
Sbjct: 1699 cttacccttttcttcaccaccgtcgataccaacgactctgtaacccatggccttggcgta 1758
Query: 463 ttgcacagcaagggaacctaaaccaccggcagcaccggagatagcaacccattggcctgg 522
||| ||||| || ||||||| |||||| |||||||| ||||| |||||||| | || |
Sbjct: 1759 ttggacagctagagaacctagaccaccagcagcaccagagatggcaacccagtcaccagc 1818
Query: 523 tttcaagtcagcggtcttcaaagccttgtaaacggtaacaccggcacacaagattggggc 582
||||||| ||| | ||||||||||||||||| |||||||||||||| | ||||| ||
Sbjct: 1819 cttcaagttagcacttttcaaagccttgtaaacagtaacaccggcacatagaattggagc 1878
Query: 583 gatttcagccaaatcggtaccctttggaatttgagcagcttgaacggcatcagcggtagc 642
| |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 1879 aacttcagccaaatcggtaccctttggaattctggcagcttgaacagcatctgcggtagc 1938
Query: 643 gtattgttggaaagaaccgtcatgggtgtaac 674
|||||||||||||||||| || ||||||||||
Sbjct: 1939 gtattgttggaaagaaccatcgtgggtgtaac 1970
>3x_Contig1566
Length = 10355
Score = 186 bits (94), Expect = 5e-47
Identities = 211/250 (84%)
Strand = Plus / Plus
Query: 425 tcaatacctaggactctcaaacccatggccttggcgtattgcacagcaagggaacctaaa 484
|||||||| | |||||| ||||||| |||||||||||||| | ||| | ||||||| |
Sbjct: 7310 tcaatacccaagactctgtaacccatagccttggcgtattggatagccaaagaacctaga 7369
Query: 485 ccaccggcagcaccggagatagcaacccattggcctggtttcaagtcagcggtcttcaaa 544
||||| |||||||| || |||||||| | || | ||||||||||| | || | |
Sbjct: 7370 ccaccacaggcaccggaaatggcaacccagtcaccggccttcaagtcagcagattttaga 7429
Query: 545 gccttgtaaacggtaacaccggcacacaagattggggcgatttcagccaaatcggtaccc 604
|||||||||||||||||||||||||| | ||||| || | |||||||||||||||||||
Sbjct: 7430 gccttgtaaacggtaacaccggcacatagaattggagcaacttcagccaaatcggtaccc 7489
Query: 605 tttggaatttgagcagcttgaacggcatcagcggtagcgtattgttggaaagaaccgtca 664
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 7490 tttggaattctagcagcttgaacggcatcagcggtagcatattgttggaaagaaccatcg 7549
Query: 665 tgggtgtaac 674
||||||||||
Sbjct: 7550 tgggtgtaac 7559
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4781
Number of Sequences: 1807
Number of extensions: 4781
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 3
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)