BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA06FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1245 0.0
>3x_Contig1698
Length = 21001
Score = 1245 bits (628), Expect = 0.0
Identities = 732/756 (96%), Gaps = 8/756 (1%)
Strand = Plus / Minus
Query: 88 ttaagattgagattgtcgacgtgactaaattagcttcatctattatcggaaaagaagcat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12669 ttaagattgagattgtcgacgtgactaaattagcttcatctattatcggaaaagaagcat 12610
Query: 148 tttttatagagtcttgtatgagaattaaagggttgacaaactctctatccaaccagtact 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12609 tttttatagagtcttgtatgagaattaaagggttgacaaactctctatccaaccagtact 12550
Query: 208 catagattccggatccaactaccaagattataattgcgacgcatttgcagaaggaaacag 267
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12549 cagagattccggatccaactaccaagattataattgcgacgcatttgcagaaggaaacag 12490
Query: 268 atagagaagctattatggaagcaataaacatagctatggaaaacttgaacagcgcttcag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12489 atagagaagctattatggaagcaataaacatagctatggaaaacttgaacagcgcttcag 12430
Query: 328 gttataaattgtcagcatccttggccttgttaaccactcaccacagcttattggatactg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12429 gttataaattgtcagcatccttggccttgttaaccactcaccacagcttattggatactg 12370
Query: 388 gcaatattgaacaagccactaaatttatcaccgaacataagatgaaatatacagcagatg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12369 gcaatattgaacaagccactaaatttatcaccgaacataagatgaaatatacagcagatg 12310
Query: 448 gtgcagccttcatcatggctgtagatcgttatgaggacaataatgtgaggacgtggttga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12309 gtgcagccttcatcatggctgtagatcgttatgaggacaataatgtgaggacgtggttga 12250
Query: 508 acaagcttttcttatacatcacaaaataccttgctg-aaaaccagtgttatctgagagct 566
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 12249 acaagcttttcttatacatcacaaaataccttgctgaaaaaccagtgttatctgagagct 12190
Query: 567 ttgcaaagattcttgaaacaactaagaagtttatgactaaatcatctgcagatttgtgga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12189 ttgcaaagattcttgaaacaactaagaagtttatgactaaatcatctgcagatttgtgga 12130
Query: 627 aattagtgaagccatccattcttattg-ccagctagaggtagtttctttcaagcatctgg 685
|||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct: 12129 aattagtgaagccatccattcttaatgcccagctagaggtagtttc-ttcaagcatctgg 12071
Query: 686 gttaagaaatgatgtttaaatggagtactatattgggctgttgctgaaagccgattaatt 745
|||||| |||||||||| |||||||||||||| || ||||||||||||||||||| |||
Sbjct: 12070 gttaag-aatgatgttttaatggagtactataatgtgctgttgctgaaagccgataaatc 12012
Query: 746 atctggcacctccgatcagatattacaggtacttttaaacaccgatctcttttgttttat 805
||||| || ||| |||||||||||||| |||||||||||| |||| ||| ||| |||||
Sbjct: 12011 atctgtcaactcgaatcagatattacagctacttttaaacaacgat-tctcttg-tttat 11954
Query: 806 ttgaaaggaaaagggctccaaatttaggtaaacttt 841
||| || |||||||||||||||| || |||||||||
Sbjct: 11953 ttg-aatgaaaagggctccaaatata-gtaaacttt 11920
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6722
Number of Sequences: 1807
Number of extensions: 6722
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)