BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC41ZA06RM1.SCF screened BAC_end
         (899 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1362                                                        1360   0.0  

>3x_Contig1362 
          Length = 8864

 Score = 1360 bits (686), Expect = 0.0
 Identities = 797/820 (97%), Gaps = 11/820 (1%)
 Strand = Plus / Plus

                                                                        
Query: 52   cttattacgcttctgatacaaacttggtaaagttttggaattggggttggtttggaagga 111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574  cttattacgcttctgatacaaacttggtaaagttttggaattggggttggtttggaagga 633

                                                                        
Query: 112  tcgattaagttatcagcacaagcatcattgtatttctcggcgaaccatttcaaagatgat 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634  tcgattaagttatcagcacaagcatcattgtatttctcggcgaaccatttcaaagatgat 693

                                                                        
Query: 172  tttaagtcaactctgttactattcaatagagattggaaatattgcttttcgaaatctaca 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694  tttaagtcaactctgttactattcaatagagattggaaatattgcttttcgaaatctaca 753

                                                                        
Query: 232  gtattgctcaaaagcgctggtcttaagattctaatttggtgatttgcaatgtctaacttc 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754  gtattgctcaaaagcgctggtcttaagattctaatttggtgatttgcaatgtctaacttc 813

                                                                        
Query: 292  attgcttccagaatttgaaacaccaatctgagagcttccaccaaagtcgatattgagtta 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  attgcttccagaatttgaaacaccaatctgagagcttccaccaaagtcgatattgagtta 873

                                                                        
Query: 352  ttttcctctgcttttttgaactttgaggacattttgtctacccatggatctctcattggt 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  ttttcctctgcttttttgaactttgaggacattttgtctacccatggatctctcattggt 933

                                                                        
Query: 412  gcgcaatggtgtttgaataattgtgataaccagtcactgaaatttgacattacaagtgat 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  gcgcaatggtgtttgaataattgtgataaccagtcactgaaatttgacattacaagtgat 993

                                                                        
Query: 472  ccctttaagagctcttgaatcaacaattcagtatccaaaacgtttgccacagtagatact 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  ccctttaagagctcttgaatcaacaattcagtatccaaaacgtttgccacagtagatact 1053

                                                                        
Query: 532  tctttttgaggaactattgttacaagaacatctttcaaagtattgaatagaggtactagt 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 tctttttgaggaactattgttacaagaacatctttcaaagtattgaatagaggtactagt 1113

                                                                        
Query: 592  ctagatctgttttcgtcgaaaacatcaggcctttggttgtaaacataaatttcattctc- 650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1114 ctagatctgttttcgtcgaaaacatcaggcctttggttgtaaacataaatttcattctca 1173

                                                                        
Query: 651  acatcactccagtacttatcggncatttgtctcttcttgatccctctttca-catcccaa 709
            ||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||| ||
Sbjct: 1174 acatcactccagtacttatcggcaatttgtctcttcttgatccctctttcaccatccaaa 1233

                                                                        
Query: 710  -ttgccctaatttgt-acata-gatcg-acactatgtcgtgtctgatttgaggattcttc 765
             ||| ||||| |||| ||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct: 1234 tttggcctaaattgtaacataggatcgaacactatgtcgtgtctgagttgaggattcttc 1293

                                                                        
Query: 766  ac-atctcagaccaatcgatctttttc-agcattgcaaa-taatggggggtaaagg-att 821
            || ||||||||| ||||||||| |||| ||||||||||| |||| ||||||||||| |||
Sbjct: 1294 acaatctcagacaaatcgatctctttcaagcattgcaaattaattgggggtaaaggaatt 1353

                                                    
Query: 822  ggagtngggtattttttggatgtatttgaatctttcttca 861
            ||||| |||||| |||| ||||||||||| ||||||||||
Sbjct: 1354 ggagttgggtatgtttt-gatgtatttgattctttcttca 1392


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7352
Number of Sequences: 1807
Number of extensions: 7352
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)