BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA07FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1351 1334 0.0
>3x_Contig1351
Length = 9242
Score = 1334 bits (673), Expect = 0.0
Identities = 741/757 (97%), Gaps = 5/757 (0%)
Strand = Plus / Minus
Query: 87 agggaagacacccatggaggagttagaaagactttcagctgctagagtacccaaaaagaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8941 agggaagacacccatggaggagttagaaagactttcagctgctagagtacccaaaaagaa 8882
Query: 147 agatttcatggacccaatcgaatcaatgttgcaggcaaagaaaaatatcgaaactgaagt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8881 agatttcatggacccaatcgaatcaatgttgcaggcaaagaaaaatatcgaaactgaagt 8822
Query: 207 tgtaaatgaagctggtgattcaagacctacaatacctatattattggagaagattaaaca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8821 tgtaaatgaagctggtgattcaagacctacaatacctatattattggagaagattaaaca 8762
Query: 267 ttctagcatctataacgatcaaattaccaattcgtatatcataccagagagaatagcgaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8761 ttctagcatctataacgatcaaattaccaattcgtatatcataccagagagaatagcgaa 8702
Query: 327 atatggtgaattagaatttgcactctctccggaagtttatcaggcgcttgagtataaaga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8701 atatggtgaattagaatttgcactctctccggaagtttatcaggcgcttgagtataaaga 8642
Query: 387 cttctattctcaccaagctgcagcaataaactgcattcataagggagagaatgtcataat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8641 cttctattctcaccaagctgcagcaataaactgcattcataagggagagaatgtcataat 8582
Query: 447 cacaacgtctacttcgtcgggaaaatctttaatctaccagttatctgcaatagacgcact 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8581 cacaacgtctacttcgtcgggaaaatctttaatctaccagttatctgcaatagacgcact 8522
Query: 507 actcaaggatccacactctacgttcatgtacatatttccgacaaaagctttagcacaaga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8521 actcaaggatccacactctacgttcatgtacatatttccgacaaaagctttagcacaaga 8462
Query: 567 tcaaaagagatcattttcaaagctattgtccaagataccagaattgtcacatgttattgt 626
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8461 tcaaaagagatcatttcaaaagctattgtccaagataccagaattgtcacatgttattgt 8402
Query: 627 agatacctatgatggagacacagagcaacaagcacgagcaggtatttcggatttcggctc 686
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 8401 agatacctatgatggagacacagagcaacaagcacgagcaggta-ttcggatttcggctc 8343
Query: 687 gtgttattttcacgaattctgatatgattcacaccagttttttacctaatcatcctaact 746
||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 8342 gtgttattttcacgaatcctgatatgattcacacaagtattttacctaatcatcctaact 8283
Query: 747 ggaaaatgtttttgaacaatctaagatatgttggccgttgatgaattgccttatttttaa 806
|||||||||||||| ||||||||||||||| ||| ||||||||||||| | ||||| |||
Sbjct: 8282 ggaaaatgtttttggacaatctaagatatg-tggtcgttgatgaattg-catatttataa 8225
Query: 807 gggctttttccggttccctttgtggttttagttatga 843
||||||||| |||||||| ||||| |||||||||||
Sbjct: 8224 gggcttttt-cggttccc-atgtggctttagttatga 8190
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7482
Number of Sequences: 1807
Number of extensions: 7482
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)