BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA07RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig918 1316 0.0
>3x_Contig918
Length = 2482
Score = 1316 bits (664), Expect = 0.0
Identities = 770/795 (96%), Gaps = 8/795 (1%)
Strand = Plus / Plus
Query: 49 gcccaaagattgtccctagaaaatttggatgtcaatttcgataaaagagttattaaagat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 gcccaaagattgtccctagaaaatttggatgtcaatttcgataaaagagttattaaagat 1129
Query: 109 ttagacaaggaatttaacgctgaagactggaccatcggcactttctcaattcctttcgct 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 ttagacaaggaatttaacgctgaagactggaccatcggcactttctcaattcctttcgct 1189
Query: 169 cagcctgctcctaaagaagaaggcacatatttcttcagagtcgttatcaagtctccagat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 cagcctgctcctaaagaagaaggcacatatttcttcagagtcgttatcaagtctccagat 1249
Query: 229 tactttggttctgatttagacttcactgttccattgactgtgaaaaatactccaattgaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 tactttggttctgatttagacttcactgttccattgactgtgaaaaatactccaattgaa 1309
Query: 289 acagatcctaagaaggagatattggaagaactagactctgacgattcaggaaatgaaggc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 acagatcctaagaaggagatattggaagaactagactctgacgattcaggaaatgaaggc 1369
Query: 349 gaagaaaatactggatattcctccgaagactcttgatgaatccgatggtgatgatctaga 408
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1370 gaagaaaatactggatattcctccgaagact-ttgatgaatccgatggtgatgatctaga 1428
Query: 409 agaggactctgatttcactgatatagatactgatactgaagatgaacatgaagcaactga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 agaggactctgatttcactgatatagatactgatactgaagatgaacatgaagcaactga 1488
Query: 469 ggaaaccactgaaaaatcctccaagacagattaactntttacttacagttcctaataaat 528
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1489 ggaaaccactgaaaaatcctccaagacagattaactttttacttacagttcctaataaat 1548
Query: 529 tatctgagcacgcattaaccatcactaaattgacagggcttttcatatgtagatatatat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1549 tatctgagcacgcattaaccatcactaaattgacagggcttttcatatgtagatatatat 1608
Query: 589 tcatactgacttcttatatacaaatgcatcattagatccagtggtattcttgtaatagtt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1609 tcatactgacttcttatatacaaatgcatcattagatccagtggtattcttgtaatagtt 1668
Query: 649 ttccaaaatgtcacccatccctggaaaagccattcttctcataccattctattgctggtt 708
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1669 ttccaaaatgtca-ccatccctggaaaagccattcttctcataccattctattgctgttt 1727
Query: 709 cattgtccgtgggcacatgcaccgtatatttgcggttgaaagcctttccttacatttatc 768
||||||| |||| ||||||| ||||||| | |||||||| |||||||||||||||||
Sbjct: 1728 cattgtcggtggcaacatgca-cgtatatatcgtgttgaaag-ctttccttacatttatc 1785
Query: 769 ttccgaattacctccacattaatgaacccacctgtcttttccacgggaaggcttaaagta 828
|| ||| ||| || ||||||||||| ||| ||||| ||||||||| || |||| |||||
Sbjct: 1786 tt-cgatatacttcaacattaatgaa-ccagctgtc-tttccacggtaa-gcttcaagta 1841
Query: 829 cgggcaatacttcga 843
||| |||||||||||
Sbjct: 1842 cggccaatacttcga 1856
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6517
Number of Sequences: 1807
Number of extensions: 6517
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)