BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA08FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig287 1152 0.0
>3x_Contig287
Length = 1432
Score = 1152 bits (581), Expect = 0.0
Identities = 651/671 (97%), Gaps = 3/671 (0%)
Strand = Plus / Minus
Query: 86 tttaaaaaggaactattcatattcgaattggactttcagtttgattgtaactatacttta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 tttaaaaaggaactattcatattcgaattggactttcagtttgattgtaactatacttta 920
Query: 146 acttgatcttattgcctgaaggaccagtatcttttttatagaagcgaaataaactacaga 205
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 919 acttgatcttattgcctgaaggaccagtatctgttttatagaagcgaaataaactacaga 860
Query: 206 gccatgtttttcttcaaagatttgtcgttgaatataacgcttcatccatcattctttgga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gccatgtttttcttcaaagatttgtcgttgaatataacgcttcatccatcattctttgga 800
Query: 266 cctcagatgaagagatatttgatgacaaagctactacaagaggtggaaggaacatgtacc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cctcagatgaagagatatttgatgacaaagctactacaagaggtggaaggaacatgtacc 740
Query: 326 ggtaaattcggatatatcctatgtgttttagactgtgaaaatatcgagattgaacgtgga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ggtaaattcggatatatcctatgtgttttagactgtgaaaatatcgagattgaacgtgga 680
Query: 386 cggattttgcctacggacgggtcagcagagtttactgttaaatatagagctgtggtatgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cggattttgcctacggacgggtcagcagagtttactgttaaatatagagctgtggtatgg 620
Query: 446 aaacctttcaagggagaagttcttgatggtatcgtatctagttgtacaaacttangttnt 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 619 aaacctttcaagggagaagttcttgatggtatcgtatctagttgtacaaacttaggtttt 560
Query: 506 gaagtggaagttggacctttgtctgtcttcgtttccccttttttgatgccagaagatttg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaagtggaagttggacctttgtctgtcttcgtttccccttttttgatgccagaagatttg 500
Query: 566 acttttcacagtggtttcaatccttcatcatatcaatcatcagaacaaattattacttaa 625
||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 499 actttcaacagtggttccaatcctccatcatatcaatcatcagaacaaattattactaaa 440
Query: 626 ggatctagagtaagattaaaaatcggcggtgcaagatcggaagtcaactctttttacgcc 685
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 439 ggatctagagtaagattaaaaatcgtcggtgcaagatcggaagtcaactctatttacgcc 380
Query: 686 attggcagtttcaaaggaagatatttggggggggatatgatattttttttccta-aacct 744
||||||||| || ||||||||| || ||||| ||||||||| ||| ||||||| |||||
Sbjct: 379 attggcagtatc-aaggaagattatttgggggtgatatgata-tttctttcctagaacct 322
Query: 745 tttacattttt 755
|| ||||||||
Sbjct: 321 ttcacattttt 311
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,597
Number of Sequences: 1807
Number of extensions: 14597
Number of successful extensions: 157
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)