BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA08RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1390 1405 0.0
>3x_Contig1390
Length = 7609
Score = 1405 bits (709), Expect = 0.0
Identities = 822/847 (97%), Gaps = 11/847 (1%)
Strand = Plus / Minus
Query: 44 gcttgagaagaataaaa--gtcagtctccgaaaagtgataggacataaactgtctcagct 101
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1752 gcttgagaagaatcaaaaggtcagtctccgaaaagtgataggacataaactgtctcagct 1693
Query: 102 ccttgtttcgattcccagttttgtctgcaagatgtttctctttggatcatttcacagttt 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1692 ccttgtttcgattcccagttttgtctgcaagatgtttctctttggatcatttcacagttt 1633
Query: 162 taaacctttttttagtctgtataaacgtttcgatatctttcaagttgcgtataatataaa 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 1632 taaacctttttttagtctgtataaacgtttcgatatctttcaagttgcgtataagaaaaa 1573
Query: 222 tagagtttgataaaatacatacatgggagtgtagaagagttatatcaagggaaagctgaa 281
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1572 tagagtttgatgaaatacatacatgggagtgtagaagagttatatcaagggaaagctgaa 1513
Query: 282 gttctgctatgtctaaggttgcgtagttgatgctatataggtatacgtgctaaggcggcg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1512 gttctgctatgtctaaggttgcgtagttgatgctatataggtatacgtgctaaggcggcg 1453
Query: 342 agttaagagaataaatgagtgctatagcatntgaaactgggtgcgttgcttgtacggcag 401
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1452 agttaagagaataaatgagtgctatagcat-tgaaactgggtgcgttgcttgtacggcag 1394
Query: 402 gttacacgaccaatggcaaacgtgctgaagcggcaagcaaaagagcatgctgtattcaag 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1393 gttacacgaccaatggcaaacgtgctgaagcggcaagcaaaagagcatgctgtattcaag 1334
Query: 462 gaaatttgcatcggtttggcccagaaaatgcacgttgcagatgttgtgttgagaagcaaa 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1333 gaaatttgcatcggtttggcccagaaaatgcacgttgcagatgttgtgttgagaagcaaa 1274
Query: 522 ctgacgccaactaagttttccaaaacgattcgtccgttgaacgatacgaaagctgttgaa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1273 ctgacgccaactaagttttccaaaacgattcgtccgttgaacgatacgaaagctgttgaa 1214
Query: 582 aatggtgcaacgttgctcagcgaaggctttgtatttggtgttacgggtagtgttgtagtg 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1213 aatggtgcaacgttgctcagcgaaggctttgtatttggtgttacgggtagtgttgtagtg 1154
Query: 642 tgggagacttt-agacagcgtcaaaa-gagctggatagacgtgaacaggtcactcaagat 699
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1153 tgggagactttaagacagcgtcaaaaggagctggatagacgtgaacaggtcactcaagat 1094
Query: 700 attgcttttttacaatcggaaatcggagaactgagatccacgacttagacccaaagcgac 759
||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct: 1093 attgcttttttacaatcggaaatcgaagaactgagatcaacgactaagacccaaagcgac 1034
Query: 760 caaattaaatcatggtcaagttcttaagggagaactaaaattaattcagttcaaaactct 819
||||| ||||||| ||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct: 1033 caaataaaatcat-gtcaaagtcttaaggaagaactaaaattaattcag-tcaaaactc- 977
Query: 820 tcctnacataaatgaaaatacaaaaaagaattttggaccacccgatattcctaacggaac 879
|||| |||||||||||||||| |||||| || |||||||| |||||||| ||||||||||
Sbjct: 976 tcctcacataaatgaaaatac-aaaaaggatattggacca-ccgatatt-ctaacggaac 920
Query: 880 aaacttg 886
|||||||
Sbjct: 919 aaacttg 913
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6201
Number of Sequences: 1807
Number of extensions: 6201
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)