BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA10FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1051 0.0
>3x_Contig1719
Length = 15804
Score = 1051 bits (530), Expect = 0.0
Identities = 669/703 (95%), Gaps = 10/703 (1%)
Strand = Plus / Plus
Query: 86 ccttacaaacattcacacaccattgtcattacttgatccaatttgatgacaagtgacaca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14920 ccttacaaacattcacacaccattgtcattacttgatccaatttgatgacaagtgacaca 14979
Query: 146 aactttctcccgttatacagcacttcctgttaccttcactactgtagattctagtggtct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14980 aactttctcccgttatacagcacttcctgttaccttcactactgtagattctagtggtct 15039
Query: 206 ttctttttcaacagtgttttttccccttcctcaatttcgcttcaagaggaaaaaaagccc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15040 ttctttttcaacagtgttttttccccttcctcaatttcgcttcaagaggaaaaaaagccc 15099
Query: 266 gtcagttgagttggctgtttcaattgcaagtacagaaaacggtttgtactcagctagctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15100 gtcagttgagttggctgtttcaattgcaagtacagaaaacggtttgtactcagctagctt 15159
Query: 326 tcagtgtgtatattgttggaagtttgtagcttggatctaaagcgtcactgccgggatgat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15160 tcagtgtgtatattgttggaagtttgtagcttggatctaaagcgtcactgccgggatgat 15219
Query: 386 tgtccagttntctcttat-ccagttaatttcattttttgtgtttgaacttgatatataaa 444
||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 15220 tgtccagttttctcttattccagttaatttcattttt-gtgtttgaacttgatatataaa 15278
Query: 445 agacggacacaaaccgtcaaattgacagttttcgtggtgtctagttgtcgtagcttttct 504
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 15279 agacggacacaaaccgtcaaattgacagttt-cgtggtgtctagttgtcgtagcttttct 15337
Query: 505 actactggtaatttggattgataaataattcagtaggaaatagccccactaaaaaattca 564
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15338 actactgttaatttggattgataaataattcagtaggaaatagccccactaaaaaattca 15397
Query: 565 agactctctcggtacctgaagagagaa-ttacatcatacaagatttcattttccaagttg 623
||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 15398 agactctctcggtacttgaggagagaaattacatcatacaagatttcattttccaagttg 15457
Query: 624 ataaatttttananggacaattgttcatcaactcattacaggatttagagaaaggttgta 683
||||||||| | ||||||| || |||||||||| ||||||||||||||| ||| ||
Sbjct: 15458 ataaatttt-attaggacaat-gtcaatcaactcatcacaggatttagagaagggt-gtc 15514
Query: 684 acggacaccccaaatatttgagaatttttattaaccgtaccagcacccttttcccattgt 743
|||||||||| ||||||| ||| ||| | || ||||||||||||||| | ||| || |||
Sbjct: 15515 acggacacccaaaatatt-gaggattctcatcaaccgtaccagcaccatattcacaatgt 15573
Query: 744 ttccatcgattggggattacctgccttttgggtaattaaactt 786
||||||||| |||||||||| || | |||||||||| ||||||
Sbjct: 15574 ttccatcga-tggggattacgtg-cgtttgggtaatcaaactt 15614
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8735
Number of Sequences: 1807
Number of extensions: 8735
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)