BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA10RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig995 525 e-149
>3x_Contig995
Length = 2553
Score = 525 bits (265), Expect = e-149
Identities = 377/411 (91%), Gaps = 3/411 (0%)
Strand = Plus / Minus
Query: 458 taaatccttggcttaagatgtactcatggaataattgtactcgttttccagatacaggga 517
||||||||| ||||| || |||||| ||||||||||||| ||||||| |||||||||
Sbjct: 2424 taaatccttttcttaatattaactcatttaataattgtactctttttccatatacaggga 2365
Query: 518 atctattgtagaattctcttgaatctgatttcaactccgaaatgaagcttgatttagtaa 577
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 atctattttataattctctttaatctgatttcaactccgaaatgaagcttgatttagtaa 2305
Query: 578 aagtcccctgnaattgttttatagaatccgacactgccaatgcatcggcaaacccataga 637
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2304 aagttccctggaattgttttatagaatccgacactgccaatgcatcggcaaacccataga 2245
Query: 638 tattgcgagcgaccatagtcataccatttgaagtctcgattactgatttgttattattgg 697
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2244 tattgcgagcgaccatagtcataccattgaaagtctcgattactgatttgttattattgt 2185
Query: 698 attagaagttcttttcgataccagcagacattccaaattgagactgttngttgttcgtca 757
|| ||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct: 2184 ataagaagttcttttcgataccagcagacaatccaaattgagactgtttg-tgttcgtca 2126
Query: 758 gatccaccgttgaaggtttgcttgaataagtccaagtaaatgttggttagcataaactgc 817
||| ||||| |||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct: 2125 gattcaccgatgaagggttgcttgaataagtccaagtaagtg-tggttagcataaactgc 2067
Query: 818 cgtttttaccgacgaattcctgggaaattgccaacccttattttgctccaa 868
|| |||||| |||| |||| ||||||| || |||| || ||||||||||||
Sbjct: 2066 cgcttttacagacggattcttgggaaa-tggcaacgctaattttgctccaa 2017
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6353
Number of Sequences: 1807
Number of extensions: 6353
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)