BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA11FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1469 1017 0.0
>3x_Contig1469
Length = 9240
Score = 1017 bits (513), Expect = 0.0
Identities = 523/525 (99%), Gaps = 1/525 (0%)
Strand = Plus / Plus
Query: 86 attgagacggttagagttggtcagttggttcaaaaatggagcattaaattgaaggcttcc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5654 attgagacggttagagttggtcagttggttcaaaaatggagcattaaattgaaggcttcc 5713
Query: 146 tccgaacatcgagccgttgttaccgttcgcctggagtgagccacgagacatatcattgtt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5714 tccgaacatcgagccgttgttaccgttcgcctggagtgagccacgagacatatcattgtt 5773
Query: 206 tacagaaccttgatatgatggcggcagaaactgagagttattttgtaatggcaactgctg 265
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5774 tacagaaccttgagatgatggcggcagaaactgagagttattttgtaatggcaactgctg 5833
Query: 266 ctgctgctgttgttgttgttgctgttgatgttcttgcgcaaaaatctgtttgagctgctg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5834 ctgctgctgttgttgttgttgctgttgatgttcttgcgcaaaaatctgtttgagctgctg 5893
Query: 326 atgaacttgcgacaaaaactccggtgccaaccgttccttctgcaactcttgtctcaactg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5894 atgaacttgcgacaaaaactccggtgccaaccgttccttctgcaactcttgtctcaactg 5953
Query: 386 cttcaatatcgctacttttgcctgcaacttggcgtcatccggtgtacttactagcttcga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5954 cttcaatatcgctacttttgcctgcaacttggcgtcatccggtgtacttactagcttcga 6013
Query: 446 ctgcgtaatcagcgctaatttatcaatatccgacagtaacgatttcacagtaatattcga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6014 ctgcgtaatcagcgctaatttatcaatatccgacagtaacgatttcacagtaatattcga 6073
Query: 506 cccagccggtccgttgtgagcggtatgttgttgtatcgccggcggagtagcacttttctg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6074 cccagccggtccgttgtgagcggtatgttgttgtatcgccggcggagtagcacttttctg 6133
Query: 566 atgcaacgcactagccttaat-aaaaaattctcgatgctgttcaa 609
||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6134 atgcaacgcactagccttaatcaaaaaattctcgatgctgttcaa 6178
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8787
Number of Sequences: 1807
Number of extensions: 8787
Number of successful extensions: 663
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)