BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA11RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1656 1187 0.0
>3x_Contig1656
Length = 14482
Score = 1187 bits (599), Expect = 0.0
Identities = 666/683 (97%), Gaps = 4/683 (0%)
Strand = Plus / Minus
Query: 44 gcttcaaccatacttattgccgattcatcttgagagctaaactcgggtactgtcacttgt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9655 gcttcaaccatacttattgccgattcatcttgagagctaaactcgggtactgtcacttgt 9596
Query: 104 ttgactgcgagcatttctcctgttgtaacgttcaaagctagatacactgcaccgaaagaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9595 ttgactgcgagcatttctcctgttgtaacgttcaaagctagatacactgcaccgaaagaa 9536
Query: 164 cccttaccaataatttcacctttaatccatgcaaactctttatactcacccct-tatttt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 9535 cccttaccaataatttcacctttaatccatgcaaactctttatactcacccctagagttt 9476
Query: 223 ctggatttgttaattgagattgcgcgtttatccgttatttctacgactttggtaccccac 282
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 9475 ctggatttgttaattgagattgtgcgtttatccgttatttctacgactttggtaccccac 9416
Query: 283 atcttagtattttttctttgcaatttctgagacacctcattttttctcgcctcgcttgct 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9415 atcttagtattttttctttgcaatttctgagacacctcattttttctcgcctcgcttgct 9356
Query: 343 tcttgggcaattattctgatggtctttgttctcttaggtggtttaa-ggcttttgacggg 401
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9355 tcttgggcaattattctgatggtctttgttctcttaggtggtttaagggcttttgacggg 9296
Query: 402 ggtcaagaactgagaactttcaccacgactagaaagaaatgctggctgtagctctgattt 461
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9295 ggtcaagaactgagaactttcaccacgactagaaagaaatgctggctgttgctctgattt 9236
Query: 462 tgtctttaatgacttttcaaaacctctagggcttggaggtgaactgtctgcatttgggga 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9235 tgtctttaatgacttttcaaaacctctagggcttggaggtgaactgtctgcatttgggga 9176
Query: 522 aggtggggggtgttaatccttcaaggattgcattatctagatcagcatctggaaagaatt 581
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9175 aggt-gggggtgttaatccttcaaggattggattatctagatcagcatctggaaagaatt 9117
Query: 582 tgtccaagttctgataaac-acatcaggagagggtcttaatgccattttctttggtgtgt 640
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 9116 tttccaagttctgataaacaacatcaggagagggtcttaatgccattttctttggtgtgt 9057
Query: 641 aagaaccttcagttgcaccgacagacactagcgtagtatcagttcctacaagatcaatgg 700
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 9056 cagaaccttcagttgcaccgacagacacttgcgtagtatcagttcctacaagatcaatgg 8997
Query: 701 ggttttcaggattgaaacaaaat 723
| ||||| |||||||| ||||
Sbjct: 8996 tatcttcagtattgaaactaaat 8974
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6754
Number of Sequences: 1807
Number of extensions: 6754
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)