BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA12FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1452 856 0.0
>3x_Contig1452
Length = 10057
Score = 856 bits (432), Expect = 0.0
Identities = 473/484 (97%), Gaps = 2/484 (0%)
Strand = Plus / Minus
Query: 91 taaggttgaattccagagttgtcttgtgcatttttaaattttcaagtgcaattcgataag 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1669 taaggttgaattccagagttgtcttgtgcatttttaaattttcaagtgcaattcgataag 1610
Query: 151 actcttcagagtcacgtaactcctcgtcgtatgtgtcaatttcaacttcatctggtaaag 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1609 actcttcagagtcacgtaactcctcgtcgtatgtgtcaatttcaacttcatctggtaaag 1550
Query: 211 actccttgagtctatattcaattgaagtgatattggactctatttcatagatttgctcct 270
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1549 actccttgagtctagattcaattgaagtgatattggactctatttcatagatttgctcct 1490
Query: 271 ctataccttggagttgattctcgtattgtatgaactcctttgtggctatgtcactatcgt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1489 ctataccttggagttgattctcgtattgtatgaactcctttgtggctatgtcactatcgt 1430
Query: 331 tttttatcttttttatgtccactctttttttgtctaaaatagaattgaattgagagagca 390
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 tttttatcttttttaggtccactctttttttgtctaaaatagaattgaattgagagagca 1370
Query: 391 aatcgccttccaaattaaaagatacgctaactaaattggctccctcttcaagctgcttct 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 aatcgccttccaaattaaaagatacgctaactaaattggctccctcttcaagctgcttct 1310
Query: 451 tgatggtttcaacatctttttttttcgtactttctgaagctttcaaaagggac-attttg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 1309 tgatggtttcaacatctttttttttcgtactttctgaagctttcaaaagggacaatttgg 1250
Query: 510 cctattagtcggagtgctgatttgctttgggtatttgctgtgtggttaccttctagttca 569
| ||| |||||||||||||||||||||||| |||||| ||| ||| || |||||||||||
Sbjct: 1249 catataagtcggagtgctgatttgctttggttatttgttgt-tggataacttctagttca 1191
Query: 570 tctt 573
||||
Sbjct: 1190 tctt 1187
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9570
Number of Sequences: 1807
Number of extensions: 9570
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)