BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA12RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1041 583 e-166
3x_Contig1132 335 1e-91
>3x_Contig1041
Length = 5356
Score = 583 bits (294), Expect = e-166
Identities = 327/338 (96%)
Strand = Plus / Plus
Query: 44 gcttattagaccatttttcacgagtatatggagatccaaatggcttcaagttcagacatg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4893 gcttattagaccatttttcacgagtatatggagatccaaatggcttcaagttcagacatg 4952
Query: 104 cacaagataattttgcttctagtttatccgcgtactccatcatctgctatttgctacgaa 163
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4953 cacaagataattttgcttctagtttagccgcgtactccatcatctgctatttgctacgaa 5012
Query: 164 ttaaggatagacacaacggtaacatcatgatagataatgagggacatgttgttcacatcg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5013 ttaaggatagacacaacggtaacatcatgatagataatgagggacatgttgttcacatcg 5072
Query: 224 attttggcttcatgttatctaattctcctggctctgtgggatttgaagctgctccgttta 283
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5073 attttggcttcatgttatctaattaacctggctctgtgggatttgaagctgctccgttta 5132
Query: 284 aactcacatatgattacgttgaagttatgggaggatcagaaagtgaaactttcaagaaat 343
||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct: 5133 aactcacatatgagtacgttgaagttatgggcggctcagacagtgacactttcaagaaat 5192
Query: 344 ttgttgaactgtgcaaggctgcgtttaaagcgctaaga 381
|||| ||| |||||||||||| ||||||||||||||||
Sbjct: 5193 ttgtagaaatgtgcaaggctgagtttaaagcgctaaga 5230
>3x_Contig1132
Length = 4143
Score = 335 bits (169), Expect = 1e-91
Identities = 240/257 (93%), Gaps = 5/257 (1%)
Strand = Plus / Plus
Query: 480 tcaaagattccatcttgaactttctgacgaagaatgcgatgaatttgtggagaatgtgcc 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaaagattccatcttgaactttctgacgaagaatgcgatgaatttgtggagaatgtgct 60
Query: 540 tatttcaaaatctcttggtagtagatacacgatgctatatgatcacttttcattactcac 599
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 61 aatttcaaaatctcttggtagtagatacacgaggctatatgatcactttcaattactcac 120
Query: 600 gcagggcatcctatagttgagatcaaccaatagttactaataccaaaatttataccacct 659
||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 121 gcagggcat-ctatagttgagatcaaccaatagtaactaataccaaaatatataccacct 179
Query: 660 tactcaaaagatcaatcc-aaacatacctcaaggtatcatagattttactggccttgttt 718
|||||||||||||||||| |||||||||||| | |||||||| | |||| |||||| ||
Sbjct: 180 tactcaaaagatcaatccaaaacatacctcaggtaatcataga-tatacttgccttg-tt 237
Query: 719 gcaatggttaccttacc 735
||||| |||||||||||
Sbjct: 238 gcaat-gttaccttacc 253
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7314
Number of Sequences: 1807
Number of extensions: 7314
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 2
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)