BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC41ZB01FM1.SCF screened BAC_end
         (959 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1666                                                        1166   0.0  

>3x_Contig1666 
          Length = 16162

 Score = 1166 bits (588), Expect = 0.0
 Identities = 662/684 (96%), Gaps = 2/684 (0%)
 Strand = Plus / Minus

                                                                         
Query: 86    tctgttcaaatcaagcatacccttatggaatacagatctggatggagccttaaggttgag 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12640 tctgttcaaatcaagcatacccttatggaatacagatctggatggagccttaaggttgag 12581

                                                                         
Query: 146   ataagtgatgctttcgatgctaaagttgttgaagctatagagttcttgttcaaacttctt 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12580 ataagtgatgctttcgatgctaaagttgttgaagctatagagttcttgttcaaacttctt 12521

                                                                         
Query: 206   cacttaaaattgattgacagctcaaagaattcctttaaaacatttaaagaaccagacatt 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12520 cacttaaaattgattgacagctcaaagaattcctttaaaacatttaaagaaccagacatt 12461

                                                                         
Query: 266   ttatttgcccattgggaaaacttgaaaaacttcggttgttatatatctggagcaagtaaa 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12460 ttatttgcccattgggaaaacttgaaaaacttcggttgttatatatctggagcaagtaaa 12401

                                                                         
Query: 326   gtaatcgcacagggttttgtcaacattactataagattgttgaaccgactacatctttac 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12400 gtaatcgcacagggttttgtcaacattactataagattgttgaaccgactacatctttac 12341

                                                                         
Query: 386   attatggaagagcaacgaaactcagtagacttagtaacttctgatgatgccagaaaatgg 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12340 attatggaagagcaacgaaactcagtagacttagtaacttctgatgatgccagaaaatgg 12281

                                                                         
Query: 446   gtagttgaagttatagaaaatgtcggtgctttcaagagaaagaccaatagattttcgaac 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12280 gtagttgaagttatagaaaatgtcggtgctttcaagagaaagaccaatagattttcgaac 12221

                                                                         
Query: 506   gtcttaacgatagcgttccaaaactctgttctttat-acatcaaggatcacagcatgctg 564
             ||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 12220 gtcttaacgaaggcgttccaaaactctgttctttataacatcaaggatcacagcatgctg 12161

                                                                         
Query: 565   ctggagagacttaggattagtggacacttcttgatctacactggagggatcctataacaa 624
             |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 12160 ctggagagacttaggaatagtggacacttcttgatctacactggagggatcctagaacaa 12101

                                                                         
Query: 625   aatgggattaatttaattgccagtgaagaacttttaggatgctttgatgatgaaataatg 684
             ||||||||| |||||||||| ||||| || ||| ||||||||| ||||||||||||||||
Sbjct: 12100 aatgggatttatttaattgcaagtgaggagcttctaggatgctctgatgatgaaataatg 12041

                                                                         
Query: 685   ggccttatcaaatctacttaaattgggtccgattttgtttcaaaagtttgaaattattat 744
             | | |||||||||||||| |||| |||||||||||  || |||||| ||||||||| || 
Sbjct: 12040 gacattatcaaatctactaaaatagggtccgatttgattccaaaag-ttgaaattaataa 11982

                                     
Query: 745   tagtttaactttttacaaccctcc 768
             |||||||||| |||||||||||||
Sbjct: 11981 tagtttaactatttacaaccctcc 11958


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,708
Number of Sequences: 1807
Number of extensions: 15708
Number of successful extensions: 191
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)