BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB01RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 1300 0.0
>3x_Contig1787
Length = 34189
Score = 1300 bits (656), Expect = 0.0
Identities = 802/837 (95%), Gaps = 11/837 (1%)
Strand = Plus / Minus
Query: 55 cttcaaaagtatataaataaagtcatttactattcgcaccacatctgcacattaccaggt 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 cttcaaaagtatataaataaagtcatttactattcgcaccacatctgcacattaccaggt 1171
Query: 115 tacatcgagacttaaggtatttaaagccgtaaactcaaccagaatgtcagttacatctgc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 tacatcgagacttaaggtatttaaagccgtaaactcaaccagaatgtcagttacatctgc 1111
Query: 175 attgccgcttttggcgttattgaaggaatctgacaacactgttaagactcatgcattaca 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 attgccgcttttggcgttattgaaggaatctgacaacactgttaagactcatgcattaca 1051
Query: 235 atcaattaaagacgtggtagatcaacagtggtccgagatatcaaatgatattaccgaaat 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 atcaattaaagacgtggtagatcaacagtggtccgagatatcaaatgatattaccgaaat 991
Query: 295 agaagcattgtatgatgatgtatcctttcctgatcgtagactagcagcaattgtggcctc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 agaagcattgtatgatgatgtatcctttcctgatcgtagactagcagcaattgtggcctc 931
Query: 355 aaaagtgtattataaccttggagaatatcaactagcggttaagtatgccctagctgcagg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 aaaagtgtattataaccttggagaatatcaactagcggttaagtatgccctagctgcagg 871
Query: 415 agagtatttgaatatcgatgaacagtcgcaatatgtcgaaacgattgtgtcacagagtat 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 agagtatttgaatatcgatgaacagtcgcaatatgtcgaaacgattgtgtcacagagtat 811
Query: 475 cgaaatgtatattgaatttgcttctagtaactacgaatcggaacctgttgaaattgatcc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 cgaaatgtatattgaatttgcttctagtaactacgaatcggaacctgttgaaattgatcc 751
Query: 535 acatttggtttctatctttgagagaatgttgaagaagtgtgtttcttcangggagtataa 594
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 750 acatttggtttctatctttgagagaatgttgaagaagtgtgtttcttcaggggagtataa 691
Query: 595 acttgcattgggattcgcattag-aagttacagacttgatgttgttgagaagcttctcac 653
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 690 acttgcattgggaatcgcattagaaagttacagacttgatgttgttgagaagcttctcac 631
Query: 654 ttncccagacaccagtactaatgccctcaaattgtgctcttacacattgggctgtttgta 713
|| | ||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 630 ttcncaggacaccagtactaatgccctcaaattgtgctcttacacatt-ggctgtatgta 572
Query: 714 ccactgcattaaccaattcttgcttttaattgagcgttatgaaaaagttgtattgaaatt 773
||||||||||||||||| || ||||| |||||||||| |||| |||||||| |||||||
Sbjct: 571 ccactgcattaaccaatactcgctttaaattgagcgtattgaagaagttgta-tgaaatt 513
Query: 774 gtaattgacaagccttgccccaaactacttttattattctcaaaaattttcggccagttt 833
|| || ||| ||| ||||||| ||||| ||||||| ||||||||||| ||| ||| ||
Sbjct: 512 gtcatgaacatgcc-tgccccagactac-tttatta-tctcaaaaattatcgtacag-tt 457
Query: 834 aaatgatattcgaatttgcccagggagcctcttttttaagtttaaattcaactaaat 890
|||||||| ||||||||| ||| |||| ||||| || ||| ||||||||||||||||
Sbjct: 456 aaatgata-tcgaatttg-ccaaggag-ctcttcttcaag-ttaaattcaactaaat 404
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7095
Number of Sequences: 1807
Number of extensions: 7095
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)