BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB02FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig592 1499 0.0
3x_Contig13 613 e-175
>3x_Contig592
Length = 2368
Score = 1499 bits (756), Expect = 0.0
Identities = 801/815 (98%), Gaps = 1/815 (0%)
Strand = Plus / Minus
Query: 89 ccggtggattgtcatggcttatatttggtagaaacagtaacagaggtgatgatattgaac 148
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 ccggtggattgtcatggcttagatttggtagaaacagtaacagaggtgatgatattgaac 972
Query: 149 ttcaggaaagattgatgtaaccttagctatttacgctattgcaattcttaaatatcagta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 ttcaggaaagattgatgtaaccttagctatttacgctattgcaattcttaaatatcagta 912
Query: 209 cttgtattataacattaataaaattcatattcgtaataaacgaaagattgtataatagaa 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 cttgtattataacattaataaaattcatattcgtaataaacgaaagattgtataatagaa 852
Query: 269 tcgctggatgagtttattgtacagtgaaccaagcgctgtgtttagcaattactggtatta 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 tcgctggatgagtttattgtacagtgaaccaagcgctgtgtttagcaattactggtatta 792
Query: 329 ttgttactcaaagcggtttgtcactacatcgttgatgagctgagttatttatccgggtaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttgttactcaaagcggtttgtcactacatcgttgatgagctgagttatttatccgggtaa 732
Query: 389 caataaacaataagtaaaattaatcgatgagatgaacataactttagaagtacagatgaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 caataaacaataagtaaaattaatcgatgagatgaacataactttagaagtacagatgaa 672
Query: 449 tgcatactgtaatctaataggcagttggtacaaatagcgagaagtaaggccaggtactca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tgcatactgtaatctaataggcagttggtacaaatagcgagaagtaaggccaggtactca 612
Query: 509 caatgggtgttccgtccttttttcgttggttgtctaggaaatatcctaaaatcatttctc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caatgggtgttccgtccttttttcgttggttgtctaggaaatatcctaaaatcatttctc 552
Query: 569 ctgtgttggaagaatatccagttatcgaagatggtgttcaactaccgcttgattactctt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctgtgttggaagaatatccagttatcgaagatggtgttcaactaccgcttgattactctt 492
Query: 629 cggccaatcccaatggtgagttggataacctttatctcgatatgaatggtattgttcacc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cggccaatcccaatggtgagttggataacctttatctcgatatgaatggtattgttcacc 432
Query: 689 cttgttcacatccggagaattagccaccacctgaaacagaggatgaaatgcttcttgctg 748
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cttgttcacatccggagaataagccaccacctgaaacagaggatgaaatgcttcttgctg 372
Query: 749 tngttgagtacacaaatcgcgttttggatatggccagaccaagaaaagtcttgatgatag 808
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 371 tgtttgagtacacaaatcgcgttttgaatatggccagaccaagaaaagtcttgatgatag 312
Query: 809 cggtttgatggtgttgcaccaagagcgaagatgaatcaacagatagcacgtatgtttcgt 868
||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 311 cgg-ttgatggtgttgcaccaagagcgaagatgaatcaacagagagcacgtaggtttcgt 253
Query: 869 tatgccagggatgcattactccataatgaagccag 903
||| ||||||||| |||||| |||||||||||
Sbjct: 252 agtgcaagggatgcaaaactccaaaatgaagccag 218
>3x_Contig13
Length = 747
Score = 613 bits (309), Expect = e-175
Identities = 510/576 (88%), Gaps = 1/576 (0%)
Strand = Plus / Minus
Query: 250 gaaagattgtataatagaatcgctggatgagtttattgtacagtgaaccaagcgctgtgt 309
|||||||||| || |||||| | |||||| |||||||||| ||||| ||| | |||||
Sbjct: 583 gaaagattgtttagtagaatagatggatgggtttattgtaaagtgataaaagagatgtgt 524
Query: 310 ttagcaattactggtattattgttactcaaagcggtttgtcactacatcgttgatgagct 369
|||| | ||| |||| || |||||| | |||| ||||||| | || || |||| |||| |
Sbjct: 523 ttagaatttaatggtttttttgttaataaaagaggtttgtaaataaatagttggtgagat 464
Query: 370 gagttatttatccgggtaacaataaacaataagtaaaattaatcgatgagatgaacataa 429
| ||||||||| |||||| | |||| |||||||||||||||| ||||||||||| |||
Sbjct: 463 gggttatttataagggtaaaattaaaaaataagtaaaattaatagatgagatgaaattaa 404
Query: 430 ctttagaagtacagatgaatgcatactgtaatctaataggcagttggtacaaatagcgag 489
|||||||||| |||||| || || |||| | ||||| | |||||||| |||||| |||
Sbjct: 403 atttagaagtaaagatgagtgagtaatgtattataataagaagttggtaaaaatagagag 344
Query: 490 aagtaaggccaggtactcacaatgggtgttccgtccttttttcgttggttgtctaggaaa 549
|||||||| ||||| | | |||||||||| || |||||| ||||||||| |||||||
Sbjct: 343 aagtaaggaaaggtaataaaaatgggtgttaagtaattttttagttggttgtataggaaa 284
Query: 550 tatcctaaaatcatttctcctgtgttggaagaatatccagttatcgaagatggtgttcaa 609
||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tataataaaataatttatcctgtgttggaagaatatccagttatcgaagatggtgttcaa 224
Query: 610 ctaccgcttgattactcttcggccaatcccaatggtgagttggataacctttatctcgat 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ctaccgcttgattactcttcggccaatcccaatggtgagttggataacctttatctcgat 164
Query: 670 atgaatggtattgttcacccttgttcacatccggagaattagccaccacctgaaacagag 729
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 163 atgaatggtattgttcacccttgttcacatccggagaataagccaccacctgaaacagag 104
Query: 730 gatgaaatgcttcttgctgtngttgagtacacaaatcgcgttttggatatggccagacca 789
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 103 gatgaaatgcttcttgctgtgtttgagtacacaaatcgcgttttgaatatggccagacca 44
Query: 790 agaaaagtcttgatgatagcggtttgatggtgttgc 825
|||||||||||||||||||||| |||||||||||||
Sbjct: 43 agaaaagtcttgatgatagcgg-ttgatggtgttgc 9
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6352
Number of Sequences: 1807
Number of extensions: 6352
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)