BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB02RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1627 533 e-151
3x_Contig757 260 4e-69
>3x_Contig1627
Length = 15708
Score = 533 bits (269), Expect = e-151
Identities = 308/316 (97%), Gaps = 4/316 (1%)
Strand = Plus / Plus
Query: 610 actctacaccagttgaaaccgatcttgtgaaaaaccgagagaacattcgctgctttgact 669
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 actctacaccagttgaa-ccgatcttgtgaaaa-ccgagagaacattcgctgctttgact 58
Query: 670 gttatatgaggattaaaatcagacctttgttcctaccgctggctttttcaaccaaatcag 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 gttatatgaggattaaaatcagacctttgttcctaccgctggctttttcaaccaaatcag 118
Query: 730 agtattaattgtgttacctctgccaataaccgatgagttatcccaatgattgcagctgat 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 agtattaattgtgttacctctgccaataaccgatgagttatcccaatgattgcagctgat 178
Query: 790 gaagcgtgtntttctactgtgatgtggtgattcaatcttc-agctttcctctggctagtt 848
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 179 gaagcgtgtttttctactgtgatgtggtgattcaatcttcaagctttcctctggctagtt 238
Query: 849 ttcgctctacata-aaaagttgaaaacatgaaatttttcaacacgtacaagatgatatcg 907
| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tccgctctacatagaaatgttgaaaacatgaaatttttcaacacgtacaagatgatatca 298
Query: 908 aaaaccatattaaaaa 923
||||||||||||||||
Sbjct: 299 aaaaccatattaaaaa 314
>3x_Contig757
Length = 2436
Score = 260 bits (131), Expect = 4e-69
Identities = 149/155 (96%)
Strand = Plus / Minus
Query: 50 aatttcctttgttaaaccagttgtatcttctcttttggtaacagtcgatgataacttcct 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aatttcctttgttaaaccagttgtatcttctcttttggtaacagtcgatgataacttcct 184
Query: 110 taggcctctctctaccatgccggaatcttgaacgttttggaacgcatttctatgcaattg 169
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 183 taggcctctctctaccatgccggaatcttgaacgttttggaacgcatttctaagaaattg 124
Query: 170 acacatcaatacagtattataccatacatctacgt 204
||||||||||| ||||||| |||||| ||| ||||
Sbjct: 123 acacatcaataaagtattaaaccataaatcaacgt 89
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7143
Number of Sequences: 1807
Number of extensions: 7143
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)