BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB03RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1634 1243 0.0
>3x_Contig1634
Length = 14275
Score = 1243 bits (627), Expect = 0.0
Identities = 732/759 (96%), Gaps = 7/759 (0%)
Strand = Plus / Plus
Query: 50 atagacaaaagaaagccaaggagttcatccaagagcaagagagaaaagctaggctcgagg 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12759 atagacaaaagaaagccaaggagttcatccaagagcaagagagaaaagctaggctcgagg 12818
Query: 110 aaagggccaagatcagagcagataaaaaaaaggctcttgagaaacagcttgaagatttta 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12819 aaagggccaagatcagagcagataaaaaaaaggctcttgagaaacagcttgaagatttta 12878
Query: 170 aacaggcgatgaaagatgtcggtgattatgtcggtgtagaggacgacgacgaataagccg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12879 aacaggcgatgaaagatgtcggtgattatgtcggtgtagaggacgacgacgaagaagccg 12938
Query: 230 aaaatgggaaacagggaagcgatgaagaggctgaagaatggacgggattttccgatgata 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12939 aaaatgggaaacagggaagcgatgaagaggctgaagaatggacgggattttccgatgata 12998
Query: 290 acggagatgcaactgaagaagaagaagaggattctgactctgttagtgtgaaaccgatct 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12999 acggagatgcaactgaagaagaagaagaggattctgactctgttagtgtgaaaccgatct 13058
Query: 350 taaagaaatatgtacagacttacttagatgatactacggtagacatcgaacccttagagc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13059 taaagaaatatgtacagacttacttagatgatactacggtagacatcgaacccttagagc 13118
Query: 410 ccaatgacaattttgagtaccttgcggaattaaataatgtgaagttagagaaatcggaac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13119 ccaatgacaattttgagtaccttgcggaattaaataatgtgaagttagagaaatcggaac 13178
Query: 470 aaattttagatcaaagcatcgaacgtgcgaagaaatatgcaaagtttttgggagttgaag 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13179 aaattttagatcaaagcatcgaacgtgcgaagaaatatgcaaagtttttgggagttgaag 13238
Query: 530 aaaaatctggtaataagagtaaaaagaataagaagttcagatacttgaccaagaacgaga 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13239 aaaaatctggtaataagagtaaaaagaataagaagttcagatacttgaccaagaacgaga 13298
Query: 590 gatgacataatcaaagaaaggccaanccatataaacgtaggaaagtattaacc-ttnttt 648
|| |||| ||||||||||||||||| ||||||||||||| ||||||| || |||
Sbjct: 13299 gaagacaaaatcaaagaaaggccaacaataataaacgtaggaagtaattaaccttttttt 13358
Query: 649 tttatttattatctncctctcttt-taaacatctcattcatccatttttccccccctctg 707
|||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 13359 tttatttattatcttcctctctttctaaacatctcattcatcca-ttttccccccctctg 13417
Query: 708 -tgntgcaatgtattctacctcgactttaaag-ataacc-aatccatcttctgatattct 764
|| |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct: 13418 ttgttgcaatgtattctacctcgactttaaagaataaccaaatccatcttctgattatct 13477
Query: 765 ctaaaa-ttggaaccaaaagagttttatttccccataaa 802
|||||| ||| |||||||||| |||| |||||||||||
Sbjct: 13478 ctaaaatttgtaaccaaaagatgtttaattccccataaa 13516
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9069
Number of Sequences: 1807
Number of extensions: 9069
Number of successful extensions: 128
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)