BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB04RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1020 1088 0.0
>3x_Contig1020
Length = 4879
Score = 1088 bits (549), Expect = 0.0
Identities = 645/669 (96%), Gaps = 6/669 (0%)
Strand = Plus / Plus
Query: 52 tgaactttg-aaggtaactagtttggtcaccctgaatggttggatttccctaacgttaac 110
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2569 tgaactttgcaaggtaacgagtttggtcaccctgaatggttggatttccctaacgttaac 2628
Query: 111 aacggcgatagttaccattatgctagaaggcagttcaacttggtggatgaccctttgttg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2629 aacggcgatagttaccattatgctagaaggcagttcaacttggtggatgaccctttgttg 2688
Query: 171 agataccaatacttgtatcagtttgataaggctatgcaaactactgaatttatttataaa 230
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 2689 agataccaatacttgtatcagtttgataaggctatgcaaactactgaaaagaattataaa 2748
Query: 231 tggttgaatacaccacaagcgtatgtctctttgaaacacgaagttgacaaggtcatcgca 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2749 tggttgaatacaccacaagcgtatgtctctttgaaacacgaagttgacaaggtcatcgca 2808
Query: 291 ttcgaaagaaatggactcttgttcatcttcaatttccatccgacagaatccttcacagat 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2809 ttcgaaagaaatggactcttgttcatcttcaatttccatccgacagaatccttcacagat 2868
Query: 351 tatcgtattggagttaatgagccaggttgctaccgtatcgtattgaactcagacaagcat 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2869 tatcgtattggagttaatgagccaggttgctaccgtatcgtattgaactcagacaagcat 2928
Query: 411 gaatacggtggctgggatcgtatcgatgagtcccaatccaagtattttactactgatttg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2929 gaatacggtggctgggatcgtatcgatgagtcccaatccaagtattttactactgatttg 2988
Query: 471 aaatggaacgaaagaaacaatttcatccaggtttacatttcaaaccgtaccgcattagtt 530
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2989 aaatggaacgaaagaaacaatttcatccaggtttacattccaaaccgtaccgcattagtt 3048
Query: 531 ctcgcccttgattccagagtgaagaatggaaattagccaaataatac-aaagcaactgta 589
|||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 3049 ctcgcccttgattcaagagtgaggaatggaaattagccaaataatacaaaagcaactgta 3108
Query: 590 tacctcatacccacttaaccaaagacatagacgggaaggatcttaattcc-aaaaaaaaa 648
||||||||||| ||| |||||||||||||||||| ||| |||| |||||| |||||||||
Sbjct: 3109 tacctcataccaactaaaccaaagacatagacggaaagaatctcaattccaaaaaaaaaa 3168
Query: 649 aaaaaaactt-ggacacc-cacatttgctagctaacc-ttcctccaactataacatttca 705
|||||||||| ||||||| ||||| |||||||||||| |||||| |||||||||| | |
Sbjct: 3169 aaaaaaacttaggacaccacacatatgctagctaaccattcctcaaactataacaatcaa 3228
Query: 706 ctcaaaaaa 714
|||||||||
Sbjct: 3229 ctcaaaaaa 3237
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,754
Number of Sequences: 1807
Number of extensions: 19754
Number of successful extensions: 2579
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)