BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB05FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1413 1112 0.0
>3x_Contig1413
Length = 8782
Score = 1112 bits (561), Expect = 0.0
Identities = 632/649 (97%), Gaps = 5/649 (0%)
Strand = Plus / Minus
Query: 86 ccattgatttactacagcttcgggcagtatatccttgaacttctcagtggagttgctcat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6703 ccattgatttactacagcttcgggcagtatatccttgaacttctcagtggagttgctcat 6644
Query: 146 tattgataaaattagttcataaagttgcactaaacgaatgcagacgatggacctgcataa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6643 tattgataaaattagttcataaagttgcactaaacgaatgcagacgatggacctgcataa 6584
Query: 206 tgccatagttactggtgattgttcaaatatgtacgttaagagttttggaaatactctttg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6583 tgccatagttactggtgattgttcaaatatgtacgttaagagttttggaaatactctttg 6524
Query: 266 ccaaagagccgcatcgaccccatattcagattcacaaagtctgactaagatgttcgtctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523 ccaaagagccgcatcgaccccatattcagattcacaaagtctgactaagatgttcgtctt 6464
Query: 326 agatttcatggttaacttgacaagtctagacttttcggccacactaagcgattgcttctc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6463 agatttcatggttaacttgacaagtctagacttttcggccacactaagcgattgcttctc 6404
Query: 386 aggttctagcagttttggaatatcataagatgggagcatatcgatcaatcttgatccact 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6403 aggttctagcagttttggaatatcataagatgggagcatatcgatcaatcttgatccact 6344
Query: 446 ttccgctaccaaacgagaagaagatcttgagtgacctttatcatatgttgttgccttttg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6343 ttccgctaccaaacgagaagaagatcttgagtgacctttatcatatgttgttgccttttg 6284
Query: 506 catcaacgctttatcgaatttgggagtcaattgaagaatttgaattgctaatcggcggat 565
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6283 catcaacgctttatcgaatttggaagtcaattgaagaatttgaattgctaatcggcggat 6224
Query: 566 agatgcatcggcgctgcagagatagaat-aaccgttgccttcgacatcttccacgacagt 624
||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 6223 agaagcatcggcgctgcagagaaagaataaaccgttgccttcgacatcttccacgacagt 6164
Query: 625 ttgggtatttttccattcatttttctctaa-tcatgatatttcgccttcaagttttgggg 683
||||||||||||||||||| |||||||||| |||||||| ||||| | ||| ||| |||
Sbjct: 6163 ttgggtatttttccattcaattttctctaattcatgataattcgcttccaaagttttggg 6104
Query: 684 gggcaattttcattccattggagaccggcatctggattctgattgttgg 732
|||| | |||||||||||| |||| |||||||| |||||||||||||||
Sbjct: 6103 gggc-agtttcattccatt-gagagcggcatct-gattctgattgttgg 6058
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7601
Number of Sequences: 1807
Number of extensions: 7601
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)