BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB05RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1215 0.0
>3x_Contig1642
Length = 16641
Score = 1215 bits (613), Expect = 0.0
Identities = 674/690 (97%), Gaps = 5/690 (0%)
Strand = Plus / Minus
Query: 43 gctttggcgttgctgctatttgtttatttaagcatcatactggaatttccaagacagcaa 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7818 gctttggcgttgctgctatttgtttatttaagcatcatactggaatttccaagacagcaa 7759
Query: 103 tattgtacgggttagcacacttcttacgtactgcttactatgttgactatttgaaaagaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7758 tattgtacgggttagcacacttcttacgtactgcttactatgttgactatttgaaaagaa 7699
Query: 163 gaatgaagtagtaccgtttcgaagattattttttctttgtcactatacaaatgatatgct 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 7698 gaatgaagtagtaccgtttcgaagattattttttctttgtcactatacaaatgacatgct 7639
Query: 223 tgtgccactgagcaatgtgataaagggaacttagtgttccggttctaatgttttctggtt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7638 tgtgccactgagcaatgtgataaagggaacttagtgttccggttctaatgttttctggtt 7579
Query: 283 ttgcaaaagctatgagctttagtttataaaaagaatagaagatattttagaccttaaact 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7578 ttgcaaaagctatgagctttagtttataaaaagaatagaagatattttagaccttaaact 7519
Query: 343 agcggtggcgtagagtgtaagtttgaacgttctatatacgtttctatgcgagtatttttt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7518 agcggtggcgtagagtgtaagtttgaacgttctatatacgtttctatgcgagtatttttt 7459
Query: 403 tttcctttactacgtaaatatcgcttatgcatttgatgccattttcattcttttccggct 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7458 tttcctttactacgtaaatatcgcttatgcatttgatgccattttcattcttttccggct 7399
Query: 463 tattcaaggctcgaccggccaaataacgaaaaaaaaaaaaaaaaaaagcatcaaatattt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7398 tattcaaggctcgaccggccaaataacgaaaaaaaaaaaaaaaaaaagcatcaaatattt 7339
Query: 523 atcttgctaatacactggagtaactcagagtctttcttagctccacttgactaggtaaga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7338 atcttgctaatacactggagtaactcagagtctttcttagctccacttgactaggtaaga 7279
Query: 583 tgaagtatctattcagngnaatttgattatatgactggtttttactgtacctgcctcatt 642
|||||||||||||||| | || |||||||||||||| |||||||||||||||||||||||
Sbjct: 7278 tgaagtatctattcagtgtaa-ttgattatatgact-gtttttactgtacctgcctcatt 7221
Query: 643 tcggcttctaggctaccaaatgtaacgcctttgggccggttcggcaaaaaaatcagatac 702
|||||||||||||||||||||||||||||||||| | |||||||| |||| ||||||
Sbjct: 7220 tcggcttctaggctaccaaatgtaacgcctttgg--ccgttcggcagaaaatcaagatac 7163
Query: 703 aattttgactggggaattcctggggaatga 732
|| ||||||| ||||| ||||||| |||||
Sbjct: 7162 aactttgact-gggaaatcctgggaaatga 7134
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,296
Number of Sequences: 1807
Number of extensions: 27296
Number of successful extensions: 3725
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)