BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB06FM1.SCF screened BAC_end
(1026 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1531 1090 0.0
>3x_Contig1531
Length = 8774
Score = 1090 bits (550), Expect = 0.0
Identities = 617/630 (97%), Gaps = 7/630 (1%)
Strand = Plus / Plus
Query: 87 tggaagttctaatattgcttccactatcgtcaataaaatatgcattagagtattctccaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tggaagttctaatattgcttccactatcgtcaataaaatatgcattagagtattctccaa 121
Query: 147 gtccagattgaagttttgccttttcgaatgctctgacatcgggcttacagactaagtcac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gtccagattgaagttttgccttttcgaatgctctgacatcgggcttacagactaagtcac 181
Query: 207 tttgcgagtaatcacagtaagttatcccatcaaatagatcagcaatacctaataaccgta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tttgcgagtaatcacagtaagttatcccatcaaatagatcagcaatacctaataaccgta 241
Query: 267 cacaacgtagtccatgattcttatatgcatttgtgaaaagccacatcttgtcaaaacatc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cacaacgtagtccatgattcttatatgcatttgtgaaaagccacatcttgtcaaaacatc 301
Query: 327 cactttctctgattcgttgcaatatctttctttgttcaggatccggtttcaaaatatctt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cactttctctgattcgttgcaatatctttctttgttcaggatccggtttcaaaatatctt 361
Query: 387 gaaggggcaacgaatcgtccactaattcattatattcaacggcatcgatttcatgatgat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaaggggcaacgaatcgtccactaattcattatattcaacggcatcgatttcatgatgat 421
Query: 447 caacgagacctttaattgctagtccgtaggttctgtagtaattttctcttagctccctgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caacgagacctttaattgctagtccgtaggttctgtagtaattttctcttagctccctgg 481
Query: 507 cagtttcattatccaggttgaacttcattttgaagtactgatgaatggactgttccattt 566
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 482 cagtttcattatccaggttgaacttcatttgaaagtactgatgaatggactgttccatta 541
Query: 567 agtcatgaatccttaacgattttttataaaggcagttatctatatcaaagaagaaacacc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 542 agtcatgaatccttaacgattttttataaaggcagttatctatatcaaagaag-aacacc 600
Query: 627 ttgagatttggatccggttttaggaataaggttgatcttgaatcaaatgttaccctttga 686
||||||||||||||||| ||||||||| ||||||||| || |||||||| || |||||||
Sbjct: 601 ttgagatttggatccgg-tttaggaat-aggttgatc-tggatcaaatg-taacctttga 656
Query: 687 ttcggggataagttaaaagactccaaatgc 716
|| |||||||||| |||||||||||||||
Sbjct: 657 -tccgggataagtt-aaagactccaaatgc 684
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8022
Number of Sequences: 1807
Number of extensions: 8022
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 1026
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1010
effective length of database: 10,329,639
effective search space: 10432935390
effective search space used: 10432935390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)