BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC41ZB06RM1.SCF screened BAC_end
         (955 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1634                                                        1209   0.0  

>3x_Contig1634 
          Length = 14275

 Score = 1209 bits (610), Expect = 0.0
 Identities = 855/911 (93%), Gaps = 20/911 (2%)
 Strand = Plus / Plus

                                                                         
Query: 49    atagacaaaagaaagccaaggagttcatccaagagcaagagagaaaagctaggctcgagg 108
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12759 atagacaaaagaaagccaaggagttcatccaagagcaagagagaaaagctaggctcgagg 12818

                                                                         
Query: 109   aaagggccaagatcagagcagataaaaaaaaggctcttgagaaacagcttgaagatttta 168
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12819 aaagggccaagatcagagcagataaaaaaaaggctcttgagaaacagcttgaagatttta 12878

                                                                         
Query: 169   aacaggcgatgaaagatgtcggtgattatgtcggtgtagaggacgacgacgaataagccg 228
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12879 aacaggcgatgaaagatgtcggtgattatgtcggtgtagaggacgacgacgaagaagccg 12938

                                                                         
Query: 229   aaaatgggaaacagggaagcgatgaagaggctgaagaatggacgggattttccgatgata 288
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12939 aaaatgggaaacagggaagcgatgaagaggctgaagaatggacgggattttccgatgata 12998

                                                                         
Query: 289   acggagatgcaactgaagaagaagaagaggattctgactctgttagtgtgaaaccgatct 348
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12999 acggagatgcaactgaagaagaagaagaggattctgactctgttagtgtgaaaccgatct 13058

                                                                         
Query: 349   taaagaaatatgtacagacttacttagatgatactacggtagacatcgaacccttagagc 408
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13059 taaagaaatatgtacagacttacttagatgatactacggtagacatcgaacccttagagc 13118

                                                                         
Query: 409   ccaatgacaattttgagtaccttgcggaattaaataatgtgaagttagagaaatcggaac 468
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13119 ccaatgacaattttgagtaccttgcggaattaaataatgtgaagttagagaaatcggaac 13178

                                                                         
Query: 469   aaattttagatcaaagcatcgaacgtgcgaagaaatatgcaaagtttttgggagttgaag 528
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13179 aaattttagatcaaagcatcgaacgtgcgaagaaatatgcaaagtttttgggagttgaag 13238

                                                                         
Query: 529   aaaaatctggtaataagagtaaaaagaataagaagttcagatacttgaccaagatcgaga 588
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 13239 aaaaatctggtaataagagtaaaaagaataagaagttcagatacttgaccaagaacgaga 13298

                                                                         
Query: 589   gatgacataatcaaagaaaggcccaacataataaacgtaggaaagtattaaccttttttt 648
             || |||| ||||||||||||||| |  ||||||||||||||||   ||||||||||||||
Sbjct: 13299 gaagacaaaatcaaagaaaggccaacaataataaacgtaggaagtaattaaccttttttt 13358

                                                                         
Query: 649   tttaatttatttatctnncctctctttctaaaacatctcattcatccatttttccccccc 708
             ||| ||||| ||||||  ||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 13359 ttt-attta-ttatct-tcctctctttct-aaacatctcattcatcca-ttttccccccc 13413

                                                                         
Query: 709   tctgttggttgcnnatgtattctacctncgacttttaagaatnanccaaatccatctttc 768
             |||||| |||||  ||||||||||||| ||||||| |||||| | ||||||||||| |||
Sbjct: 13414 tctgtt-gttgc-aatgtattctacct-cgactttaaagaat-aaccaaatccatc-ttc 13468

                                                                         
Query: 769   tgattatcttctaaaattttgtaccaaaagaatgtttatttccccattaaattcagaagt 828
             |||||||| ||||||||||   |||||||| ||||||| |||||||| |||| ||| |||
Sbjct: 13469 tgattatc-tctaaaatttgtaaccaaaag-atgtttaattccccataaaatacag-agt 13525

                                                                         
Query: 829   gcccactggttttact-ccaggaccatccgcatttc-aaattaaatcgggcgcc-tagcg 885
             ||||||| | | |||| |||| ||||| || || || |||| |||||| ||||| |||||
Sbjct: 13526 gcccact-gatatactcccagaaccatacgaatctcaaaataaaatcgagcgccatagcg 13584

                                                                         
Query: 886   cttttattcc-cgcatttttcccgttcaacaaaatgc-tctttaaagaccgtcc-ctttt 942
             || | || || ||||||||||| || ||||||||||| |||| ||||||||||| |||| 
Sbjct: 13585 ctataataccacgcatttttccggtacaacaaaatgcttcttaaaagaccgtccgctttg 13644

                        
Query: 943   gtactactatt 953
              ||||||||||
Sbjct: 13645 ttactactatt 13655


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9711
Number of Sequences: 1807
Number of extensions: 9711
Number of successful extensions: 158
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)