BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB07FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1221 0.0
>3x_Contig1749
Length = 22923
Score = 1221 bits (616), Expect = 0.0
Identities = 650/660 (98%), Gaps = 1/660 (0%)
Strand = Plus / Plus
Query: 88 cgatcagtgacgattcttcgactacaaaaccctcgacttacgaaacaaacaacaacaaaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3737 cgatcagtgacgattcttcgactacaaaaccctcgacttacgaaacaaacaacaacaaaa 3796
Query: 148 gacaacactagaaaacatttaattaaaagtaagtgtttgaagtgctgatgtttggttcat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3797 gacaacactagaaaacatttaattaaaagtaagtgtttgaagtgctgatgtttggttcat 3856
Query: 208 atagttgaatgtttaacttttttccaaaaaattttcaaaaaggttacccgacttcttaac 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3857 atagttgaatgtttaacttttttccaaaaaattttcaaaaaggttacccgacttcttaac 3916
Query: 268 gacctgaaatttagggctgcaacggtcagcttatcataatgtacttgatgatgaattgaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3917 gacctgaaatttagggctgcaacggtcagcttatcataatgtacttgatgatgaattgaa 3976
Query: 328 gaatagcgaacggtaaggtagtaagaaccgaatcgggttaggtactttgaacaaaggatt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3977 gaatagcgaacggtaaggtagtaagaaccgaatcgggttaggtactttgaacaaaggatt 4036
Query: 388 ccgacaacaaaaggcagtacaaatttcactggaggataaaaaatacctttccccccctta 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4037 ccgacaacaaaaggcagtacaaatttcactggaggataaaaaatacctttccccccctta 4096
Query: 448 ttcattgaacagctagaagattatctttccaaaatgagcgcctcatactgggattcgagt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4097 ttcattgaacagctagaagattatctttccaaaatgagcgcctcatactgggattcgagt 4156
Query: 508 cagaggcacaagtggaagtatactatggaatccttggctaaggagaagcagatactctgg 567
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 4157 cagaggcacaagtggaagtatactagggaatccttggctaaggagaagcagaaactctgg 4216
Query: 568 ctgttggaatgccaattattcccacaaggtttgaatgttacgatttacgattcgaatgcg 627
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 4217 ctgttggaatgccaattattcccacaaggtttgaatgttacgattcacgattcgaaggcg 4276
Query: 628 aacaagcaggtgacgacaaacatttcggttacacagcgagatctgcattatgatcgagac 687
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4277 aacaagcaggtgacgacaaacattccggttacacagcgagatctgcattatgatcgagac 4336
Query: 688 tatcatttgaagatttactgctatttccttataatgaagttgggcaaggaggctcaatat 747
|| |||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4337 tacaatttgaggatatactgctatttccttataatgaagttgggc-aggaggctcaatat 4395
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7726
Number of Sequences: 1807
Number of extensions: 7726
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)