BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB07RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1516 1211 0.0
>3x_Contig1516
Length = 8750
Score = 1211 bits (611), Expect = 0.0
Identities = 659/670 (98%), Gaps = 4/670 (0%)
Strand = Plus / Plus
Query: 53 agatctctccaaacttctccattgccagtgccttcggtaacgtccacggtgtttacaaga 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5087 agatctctccaaacttctccattgccagtgccttcggtaacgtccacggtgtttacaaga 5146
Query: 113 tcgccgctgccctaaaaccagaattgttgggtactttccaagactacgctgctaagcaat 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5147 tcgccgctgccctaaaaccagaattgttgggtactttccaagactacgctgctaagcaat 5206
Query: 173 taaacaagaaggcagaagacaagccattgtacttggtcttccacggtggttccggttcct 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5207 taaacaagaaggcagaagacaagccattgtacttggtcttccacggtggttccggttcct 5266
Query: 233 ccaccaaggacttccatactgccatcgatttcggtgtcgtaaaggtcaacttggatactg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5267 ccaccaaggacttccatactgccatcgatttcggtgtcgtaaaggtcaacttggatactg 5326
Query: 293 actgtcaattcgcttacttgtccggtatcagagactacgtcttgaacaagaaggactact 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5327 actgtcaattcgcttacttgtccggtatcagagactacgtcttgaacaagaaggactact 5386
Query: 353 tgatgaccccagtcggtaacccaacccggtgaagactctccaaacaagaagtactacgac 412
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5387 tgatgaccccagtcggtaacccaa-ccggtgaagactctccaaacaagaagtactacgac 5445
Query: 413 ccaagagtctgggttagagaaggtgaaaagaccatgagcaagagaatcactcaagctttg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5446 ccaagagtctgggttagagaaggtgaaaagaccatgagcaagagaatcactcaagctttg 5505
Query: 473 gaaatcttccgtactaagggtgctttggaataaagttcttttgtttagtaccattatccc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5506 gaaatcttccgtactaagggtgctttggaataaagttcttttgtttagtaccattatccc 5565
Query: 533 anacaatttaacttataattttctatatacaatttaaataccagaacgcatgatatgatc 592
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5566 aaacaatttaacttataattttctatatacaatttaaataccagaacgcatgaaatgatc 5625
Query: 593 aaatgaagacatctgaaccattagttacaaaatgattgccagggatccgctgtgcatcgg 652
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5626 aaatgaagacatctgaaccattagttacaaaatgattggcagggatccgctgtgcatcgg 5685
Query: 653 atacgttcacaagtgttaatcttggacgctaccga-gactta-ctgttatcgaac-ggat 709
|||||||||| ||||||| ||||||||||||||| |||||| |||||||||||| | ||
Sbjct: 5686 atacgttcaccagtgttatccttggacgctaccgaggacttacctgttatcgaactgcat 5745
Query: 710 ttgtcttttt 719
||||||||||
Sbjct: 5746 ttgtcttttt 5755
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6850
Number of Sequences: 1807
Number of extensions: 6850
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)