BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC41ZB08FM1.SCF screened BAC_end
         (890 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig782                                                          517   e-146

>3x_Contig782 
          Length = 2529

 Score =  517 bits (261), Expect = e-146
 Identities = 290/296 (97%), Gaps = 3/296 (1%)
 Strand = Plus / Plus

                                                                        
Query: 91   tgatcaatgaactctaacgtgattctgtcacgcaaatgttcagtaatatcttctctttgt 150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2213 tgatcaatgaactctaacgtgattctgtcacgcaaatgttcagtaatatcttctctttgt 2272

                                                                        
Query: 151  aacatatgcgtaaagaaccaacagagccgaacatcgaatatctccgaatgcgatctcaat 210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2273 aacatatgcgtaaagaaccaacagagccgaacatcgaatatctccgaatgcgatctcaat 2332

                                                                        
Query: 211  tcatctaaaagttgctcaactgggatagttgggcaagcaaataacttcataatattcatt 270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2333 tcatctaaaagttgctcaactgggatagttgggcaagcaaataacttcataatattcatt 2392

                                                                        
Query: 271  gacaagtttt-aaaagttg-aacagacgatgtat-aacaaatggatttgatatagcattc 327
            |||||||||| |||||||| |||||||||||| | ||||||||| |||||||||||||||
Sbjct: 2393 gacaagttttcaaaagttgaaacagacgatgtttcaacaaatgggtttgatatagcattc 2452

                                                                    
Query: 328  ataatcaaatcttctagagtcaatgaatcgatatctccataatatacttgtaaacc 383
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2453 ataatcaaatcttctagagtcaatgaatcgatatctncataatatacttgtaaacc 2508


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,394
Number of Sequences: 1807
Number of extensions: 38394
Number of successful extensions: 4466
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)