BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB08RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig959 985 0.0
>3x_Contig959
Length = 3065
Score = 985 bits (497), Expect = 0.0
Identities = 597/621 (96%), Gaps = 7/621 (1%)
Strand = Plus / Plus
Query: 44 gcttccttttaca-gaggtaaaacttcagtcttgtgcaactctgattttgagggtatata 102
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2123 gcttccttttacaagaggtaaaacttcagtcttgtgcaactctgattttgagggtatata 2182
Query: 103 attgtacttgttatccaaaaaccgcgttgcggttctcgtataccttgcatggcaactatc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2183 attgtacttgttatccaaaaaccgcgttgcggttctcgtataccttgcatggcaactatc 2242
Query: 163 acatattctatttttatctagctttgaccaaggcaatcgataccagataactttatttgt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 2243 acatattctatttttatctagctttgaccaaggcaatcgataccagataacttcaaatgt 2302
Query: 223 tcttccacacgagatacagttgcccggagtctttaccctaacgatctttctcaatcgttt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2303 tcttccacacgagatacagttgcccggagtctttaccctaacgatctttctcaatcgttt 2362
Query: 283 ggttgtatcttggatcgtaactccctcacagttcaaacattttaacgcagaagttggact 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2363 ggttgtatcttggatcgtaactccctcacagttcaaacattttaacgcagaagttggact 2422
Query: 343 aggactaactccattctcttctctgtacnttttactttatagtctttacattgcctctat 402
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2423 aggactaactccattctcttctctgtac-ttttactttatagtctttacattgcctctat 2481
Query: 403 tgtgtataaaagtgcaatccgtgtttcgacatctataccaactgaaccgttggtaatggt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2482 tgtgtataaaagtgcaatccgtgtttcgacatctataccaactgaaccgttggtaatggt 2541
Query: 463 cacagttggggaaatccgtttccc-atatataccttgtcattataccatgtcatggatgt 521
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 2542 cacagttggggaaatccgtttcccaaaatataccttgtcattataccatgtcatggatgt 2601
Query: 522 atcagttttgcaactgttgcattgacttttttttcgactttgattgtacaaatcctctct 581
|||| |||||||||||||||| |||| ||||| ||||||||||||||||||||| |||||
Sbjct: 2602 atcatttttgcaactgttgcaatgacctttttctcgactttgattgtacaaatcttctct 2661
Query: 582 tcggtttatcaa-taccacagtaccagcacacttgagacaagggaaaag-catcgtgggg 639
|||| ||||||| |||||||||| ||||||||||||||| ||| || ||||| |||
Sbjct: 2662 tcgg-ttatcaattaccacagtattagcacacttgagacatggggttagttatcgt-ggg 2719
Query: 640 ggttccctcatcaaggaatga 660
|||||| ||||||||||||||
Sbjct: 2720 ggttccatcatcaaggaatga 2740
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,848
Number of Sequences: 1807
Number of extensions: 16848
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)