BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB09RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1589 1199 0.0
>3x_Contig1589
Length = 10239
Score = 1199 bits (605), Expect = 0.0
Identities = 734/762 (96%), Gaps = 13/762 (1%)
Strand = Plus / Minus
Query: 44 cttaacgaatacaaacgagtaaactttaataaaaacatgggagaaagtcagtgtagattt 103
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7410 cttaacgaatacaaacgag-aaactttaataaaaacatgggagaaagtcagtgtagattt 7352
Query: 104 cggaaatatttttggcgatcttctcccgaattcattcgccaaattggaaccttcagaagg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7351 cggaaatatttttggcgatcttctcccgaattcattcgccaaattggaaccttcagaagg 7292
Query: 164 taaagatgtaaccgagggattagaagttaaagttaaattaggtaaaatttggaaagatat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7291 taaagatgtaaccgagggattagaagttaaagttaaattaggtaaaatttggaaagagag 7232
Query: 224 tctggtagaactctctggtggacagcgttccctaattgcgttatcattgatccttgcatt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7231 tctggtagaactctctggtggacagcgttccctaattgcgttatcattgatccttgcatt 7172
Query: 284 gttgcagttcaaacctgcaccaatgtatatattggatgaagtggatgccgcattagattt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7171 gttgcagttcaaacctgcaccaatgtatatattggatgaagtggatgccgcattagattt 7112
Query: 344 aagtcatactcagaacattggtcatcttattaaaaccaggntttaaaggctcccaattta 403
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7111 aagtcatactcagaacattggtcatcttattaaaaccagg-tttaaaggctcccaattta 7053
Query: 404 tcgttgtatcgttgaaagaaggtatgttcactaacgctaaccgggtgtttagaactaggt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7052 tcgttgtatcgttgaaagaaggtatgttcactaacgctaaccgggtgtttagaactaggt 6993
Query: 464 tccaagatggtacatcagtagttagtgttatgtaatgattctcatataccaaaat-aata 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6992 tccaagatggtacatcagtagttagtgttatgtaatgattctcatataccaaaataaata 6933
Query: 523 gattgataaat-atanacagtattcaacgaaacacattaaaaaatcagtaaacttctagg 581
||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6932 gattgataaataataaacagtattcaacgaaacacataaaaaaatcagtaaacttctagg 6873
Query: 582 atatatctagaaagttccttttagtcttcaatggcagcatccaagtcaacgttgatgccc 641
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 6872 atatatctagaagtttcctttaagtcttcaatggcagcatccaagtcaacgttgatgccc 6813
Query: 642 ttctncttcgcatctgcagcaaatatatcttgtagagncttgagtgatatcaggaacagg 701
|||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
Sbjct: 6812 ttctccttcgcatctgcagcaataatatcttgtagag-cttgagtgatatcaggaaca-g 6755
Query: 702 gccaccgttggaccacattagtagaagggacccttcattgccaatcatttgcagtncttc 761
|||| ||||||||||||| ||||||| ||| ||||||||| |||||| ||||||| ||||
Sbjct: 6754 gcca-cgttggaccacataagtagaa-ggaaccttcattgtcaatca-ttgcagt-cttc 6699
Query: 762 aactttggggcaagttttcttggatacgatccttggatgtaa 803
|||| | ||||||||||||| |||||||| |||||||||||
Sbjct: 6698 aactct--ggcaagttttctttgatacgat-cttggatgtaa 6660
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6606
Number of Sequences: 1807
Number of extensions: 6606
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)