BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB10FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1677 969 0.0
>3x_Contig1677
Length = 15081
Score = 969 bits (489), Expect = 0.0
Identities = 627/653 (96%), Gaps = 15/653 (2%)
Strand = Plus / Plus
Query: 89 ttatccagttagttttatctttaagttcaggaacaagtccatagtccaactgactcttga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1982 ttatccagttagttttatctttaagttcaggaacaagtccatagtccaactgactcttga 2041
Query: 149 gatcttctatcgcttcatcttgctctcttaacttcctattcaactcgcttataatgaact 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2042 gatcttctatcgcttcatcttgctctcttaacttcctattcaactcgcttataatgaact 2101
Query: 209 catgtttagtattatcatttacttctggatttttcttctcttgtgacaaaaagaactgga 268
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2102 catgtttagtattatcaattacttctcgatttttcttctcttgtgacaaaaagaactgga 2161
Query: 269 attcatgttccaaaaaggtatacttatccttccattcctgcagctcccgcttcaacgctt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2162 attcatgttccaaaaaggtatacttatccttccattcctgcagctcccgcttcaacgctt 2221
Query: 329 taatttgttcagctggtaacacttgctctaaatcattggaagatcttctataactaccaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2222 taatttgttcagctggtaacacttgctctaaatcattggaagatcttctataactaccaa 2281
Query: 389 acaatgatgccccgcgtcttgttggtgtaagattatcagattgcatcgcaatttgcaccg 448
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2282 acaatgatgccccgcgtcttgttggtgtaagaatatcagattgcatcgcaatttgcaccg 2341
Query: 449 ctgtgtcgaaagaggttccaacgagcatcgaaaaagcctctaaaaactgtttctttcgac 508
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2342 ctgtgtcgaaagaggttccaacgagcatcgaaaaagcctctaaaaactg-ttctttcgac 2400
Query: 509 aacgttttcatttggatcgttatttgacccatgattctatcaccttgtcattggatttgg 568
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 2401 aacgttttca-ttggatcgtta-ttgacccatgattctatcaccttgtcattgga-ttgg 2457
Query: 569 gtggtcaactttcgatggccatttctctgtcaatgaaagaaattatcttccgggatattc 628
||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||| ||
Sbjct: 2458 gtggtcaac-ttcgatgg-caattctctgtcaatgaaagaaattatc-tccgggata-tc 2513
Query: 629 cttcgcttacacactatccatcgctaccctgattctaaaactgacccgggcccgatctta 688
|||||| |||||| |||||||||||| ||||||||||||||||| || ||| ||||| ||
Sbjct: 2514 cttcgcatacaca-tatccatcgcta-cctgattctaaaactga-ccaggcacgatc-ta 2569
Query: 689 ttaacccggggcctctccgtacgggttcatggaaaaaaagtttaacgctcact 741
||||| || | |||||||||| ||||||||| ||||||||||| ||||||||
Sbjct: 2570 ataacctggtg-ctctccgtac-ggttcatgg-aaaaaagtttagcgctcact 2619
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6351
Number of Sequences: 1807
Number of extensions: 6351
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)