BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB10RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1508 1201 0.0
>3x_Contig1508
Length = 7899
Score = 1201 bits (606), Expect = 0.0
Identities = 712/741 (96%), Gaps = 5/741 (0%)
Strand = Plus / Plus
Query: 46 gcttcgaaaaga-caacgatccaaatcgtgtgaaagcccgtgaaaagaaaggagaagtgt 104
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6885 gcttcgaaaagaacaacgatccaaatcgtgtgaaagcccgtgaaaagaaaggagaagtgt 6944
Query: 105 tggttaccctgagttcgtgatttgcaagggaaagaatcaaccaacgcttatcaagtcttc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6945 tggttaccctgagttcgtgatttgcaagggaaagaatcaaccaacgcttatcaagtcttc 7004
Query: 165 tgtcatcggacagttttctattttacttctcgggtaagacattttcactgaacttttcta 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 7005 tgtcatcggacagttttctattttacttctcgggtaagacattttcactgaactttccga 7064
Query: 225 ttacattccccggtgggtcgtattcgcatactgtatattgaccgtaatactggccacatc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7065 ttacattccccggtgggtcgtattcgcatactgtatattgaccgtaatactggccacatc 7124
Query: 285 gtataaatgcacagccaagtttcgaggtatttttccataccagctgggtgaaatgtcctg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7125 gtataaatgcacagccaagtttcgaggtatttttccataccagctgggtgaaatgtcctg 7184
Query: 345 tatttgctgcgaactgtgggttgttaaaatcgtacagttttacctcgttataccatgcta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7185 tatttgctgcgaactgtgggttgttaaaatcgtacagttttacctcgttataccatgcta 7244
Query: 405 gaacagctgaggtagtattatatcctagagcaaggttctctccgtaaggcagctttgagt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7245 gaacagctgaggtagtattatatcctagagcaaggttctctccgtaaggcagctttgagt 7304
Query: 465 gttctaattgcccgttgcatacgtaagaattggcgaaattttgtgctctagatgcaagtt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7305 gttctaattgcccgttgcatacgtaagaattggcgaaattttgtgctctagatgcaagtt 7364
Query: 525 ctggagcccaaactagcgatgaaacctgatgtttcttgcgtaatgagttgtgcacgttca 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7365 ctggagcccaaactagcgatgaaacctgatgtttcttgcgtaatgagttgtgcacgtcca 7424
Query: 585 ggattttcgttttg-aatccgggttcgtgcccgttggttttgtggacacttgttccgttg 643
|||||| ||||||| ||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct: 7425 ggatttccgttttgaaatccgggtccgtggccgttggttttgtggacacttgttccg-tg 7483
Query: 644 atgttgccggaggctgttctgtaaacaatggttcttg-agttgtgaaaatggttggccgt 702
| | ||||||||||||||||||||||||| ||||||| |||||||||| |||| | |
Sbjct: 7484 aaggtgccggaggctgttctgtaaacaattgttcttgaagttgtgaaatgtgttgtcgtt 7543
Query: 703 gaaacggttttcgntcctattattcgaacagggttggattttggcactgttttaccctgg 762
|| |||||||||| || |||||||||||||| |||| |||||| ||||||| |||||||
Sbjct: 7544 gagacggttttcgttcttattattcgaacagtgttgtattttgtcactgttataccctgt 7603
Query: 763 gcttgac-caagatttttgcg 782
|| |||| |||||||||||||
Sbjct: 7604 gcatgacacaagatttttgcg 7624
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7338
Number of Sequences: 1807
Number of extensions: 7338
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)