BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB11FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1591 1170 0.0
>3x_Contig1591
Length = 14045
Score = 1170 bits (590), Expect = 0.0
Identities = 619/626 (98%), Gaps = 2/626 (0%)
Strand = Plus / Minus
Query: 88 attaatgacgttggtttcatttttaaactgatctccgaggagttgcaaacaatgtgataa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 attaatgacgttggtttcatttttaaactgatctccgaggagttgcaaacaatgtgataa 607
Query: 148 atagccgcaatacgccttttcatcctccattttgtttgatttacgatgaacaatagaggc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atagccgcaatacgccttttcatcctccattttgtttgatttacgatgaacaatagaggc 547
Query: 208 gcccacagctaaaatcgccgagagaagatatggttcgttcctgccgaatgacagtaatat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gcccacagctaaaatcgccgagagaagatatggttcgttcctgccgaatgacagtaatat 487
Query: 268 atctctaagtggattattttggtcttgaaagaaaggtgtgatggaatccaaacagtcatg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atctctaagtggattattttggtcttgaaagaaaggtgtgatggaatccaaacagtcatg 427
Query: 328 gtaaaaggttcgcagatatttatcatgcagaccacctagcttgaatgattctagagatgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtaaaaggttcgcagatatttatcatgcagaccacctagcttgaatgattctagagatgt 367
Query: 388 gttgaaagtgattgtattatcgaccaaaaaggagattggaactgatgaaaactccgaagc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gttgaaagtgattgtattatcgaccaaaaaggagattggaactgatgaaaactccgaagc 307
Query: 448 agtgttaagcattggaaagttcagatctggcagatctaagtcgttaaactcaagatcctt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agtgttaagcattggaaagttcagatctggcagatctaagtcgttaaactcaagatcctt 247
Query: 508 taattcatcgctaaccaaagagtcattcaacttcatactaacaatgtcgttgagattctg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 taattcatcgctaaccaaagagtcattcaacttcatactaacaatgtcgttgagattctg 187
Query: 568 aatcataagattggcatccatagcgttaatgctacctgcaggtatgatgtttggcattcc 627
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 186 aatcaaaagattggcatccatagcgttaatgctacctgcaggtatgaggtttggcaatcc 127
Query: 628 tgaatttaccaaagaatcattaacatggctattcagtgagaaattttgtttcactcttca 687
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 126 tgaatttaccaaagaatcattaacatggctattcagtgagaaa-tttgtttcactcttca 68
Query: 688 ttgttgcatcaatctttaacctttcc 713
| ||||||||| || |||||||||||
Sbjct: 67 tcgttgcatcattc-ttaacctttcc 43
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9559
Number of Sequences: 1807
Number of extensions: 9559
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)