BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZB12FM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig675 1031 0.0
>3x_Contig675
Length = 2979
Score = 1031 bits (520), Expect = 0.0
Identities = 675/711 (94%), Gaps = 13/711 (1%)
Strand = Plus / Minus
Query: 90 caacaatgtattaaggttagcctttgtagtatttcgggcttcagcaaacgcttttttcat 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1668 caacaatgtattaaggttagcctttgtagtatttcgggcttcagcaaacgcttttttcat 1609
Query: 150 cagaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatcacatc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1608 cagaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatcacatc 1549
Query: 210 aataccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcagagttgt 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1548 aataccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcagagttgt 1489
Query: 270 tccgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggagaaaca 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1488 tccgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggagaaaca 1429
Query: 330 acaagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcataggaata 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1428 acaagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcataggaata 1369
Query: 390 aaaaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggtatacaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1368 aaaaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggtatacaa 1309
Query: 450 gggtgttgctgtcataccgtctcggctgttatgcgaaagtaacgaaatattttttttttt 509
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1308 gggtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattttttttttt 1249
Query: 510 tctttcg-aaaaaacgtcgactcaagcc-tcattcac-aactcgtcccagaagcaacgta 566
||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct: 1248 tctttcgaaaaaaacgtcgactcaagccatca-tcacaaactcgtcccagaagcaacgta 1190
Query: 567 cgactcgcatatttgcttgatctggc-aatcgcataccgt-atatctttagatttagccc 624
||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| |||||||
Sbjct: 1189 cgactcgcatatttgctgaatctggcaaatcgcataccgtaatatcattagaattagccc 1130
Query: 625 caaggc-attcttaagcactccaggg-aaaaaaaaagat-gaaacgaacattcccacacg 681
|||||| |||||||||||||| |||| |||||||||||| ||||||||||||| |||||
Sbjct: 1129 caaggcaattcttaagcactcgagggaaaaaaaaaagatagaaacgaacattcacacaca 1070
Query: 682 ggaacttacagctggaagaaag-aaggaaccggt--taaaaaaaaaaaagcaatgatgaa 738
| |||||||||||| |||||| |||||| | || |||||| ||||||||||||||||
Sbjct: 1069 gaaacttacagctgagagaaagaaaggaaacagtagaaaaaaagaaaaagcaatgatgaa 1010
Query: 739 ttaagccctgttatcatgggggggccaagcgccaatgctttgcatacttta 789
|||||| ||| ||||| || | | ||||||||||||||||||||||||
Sbjct: 1009 gtaagcctgattaacatggtggtg-cgagcgccaatgctttgcatacttta 960
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,158
Number of Sequences: 1807
Number of extensions: 21158
Number of successful extensions: 201
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)