BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC01FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1584 1104 0.0
>3x_Contig1584
Length = 9710
Score = 1104 bits (557), Expect = 0.0
Identities = 691/729 (94%), Gaps = 5/729 (0%)
Strand = Plus / Plus
Query: 87 aacaaggaaaaaggccagccaggattcattctacgtgtgttcgcattcccagcgttgtta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3985 aacaaggaaaaaggccagccaggattcattctacgtgtgttcgcattcccagcgttgtta 4044
Query: 147 gacaagacgttccttgcactcttgatgaccggtgatctcggggcgatgagaatcatgaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4045 gacaagacgttccttgcactcttgatgaccggtgatctcggggcgatgagaatcatgaga 4104
Query: 207 agctactatcagttgttaagaggattcgcaagtgaaatgaaagatgaggtctggttccta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4105 agctactatcagttgttaagaggattcgcaagtgaaatgaaagatgaggtctggttccta 4164
Query: 267 gaaggcatgactcaggtactaccacaggatgtcgatgaatacagtggtggtggtggtatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4165 gaaggcatgactcaggtactaccacaggatgtcgatgaatacagtggtggtggtggtatg 4224
Query: 327 cacatgatgttggatttcttaggcggagggttaccctccatgactacaaccaacttgacg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 cacatgatgttggatttcttaggcggagggttaccctccatgactacaaccaacttgacg 4284
Query: 387 gattttggaattttctagatcaactattcgtaccttaaaaatggactttcagtatggaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285 gattttggaattttctagatcaactattcgtaccttaaaaatggactttcagtatggaaa 4344
Query: 447 aatcaaaaaaatcgaagagacgttaccactgcacaaaactagcatgagaaaccttttatt 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4345 aatcaaaaaaatcgaagagacgttaccactgcacaaaactagcatgagaaacctttaatt 4404
Query: 507 cttgttcacaatatgaaatttttcaacttttgcacttttacaaattgtaaatatgtatat 566
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4405 cttgttcacaatatgaaa-ttttcaacttttgcacttttacaaattgtaaatatgtatat 4463
Query: 567 atatgcacatacat-tccacacacagataggagtaaatttctttcacttgttttatgcat 625
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4464 atatgcacatacatacccacacacagataggagtaaatatctttcacttgttttatgca- 4522
Query: 626 ttttaatggcatatttattataaagtgttttcaagaattaatcctaaaggacctttgaaa 685
|||||||||||||||||||||||||||||||||||||||| || ||||| | ||| ||
Sbjct: 4523 ttttaatggcatatttattataaagtgttttcaagaattagtcgtaaagtgacattggaa 4582
Query: 686 gcgagaaatggtcgttattaattcctacatttggcattgggtncgttagaaactgttttg 745
|||||| ||||||||| |||| | ||| |||||||||||| || || |||||| |||
Sbjct: 4583 gcgagagatggtcgttcataatcctaacaattggcattgggt-cgataagaactgtattg 4641
Query: 746 cctgggcaaagaaattccttcccgaaaaaatggttgggtttggccaccggagaattaccc 805
|||||||||||||| | | | |||||| ||||| |||||| | |||||||||| | |
Sbjct: 4642 actgggcaaagaaatacttccaagaaaaattggtt-ggtttgactaccggagaatcaaca 4700
Query: 806 gatgaactg 814
|||||||||
Sbjct: 4701 gatgaactg 4709
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,974
Number of Sequences: 1807
Number of extensions: 14974
Number of successful extensions: 234
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)