BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC01RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1051 0.0
>3x_Contig1654
Length = 17174
Score = 1051 bits (530), Expect = 0.0
Identities = 645/672 (95%), Gaps = 9/672 (1%)
Strand = Plus / Minus
Query: 137 attctgatttcatcaaacaaaatcccgtagtagatcaatgtattgtatttgccgaaatat 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17174 attctgatttcatcaaacaaaatcccgtagtagatcaatgtattgtatttgccgaaatat 17115
Query: 197 gcttggctaaaatgtgcattttcagtggtacaaacgaagtacaaatttcatgtatgcttt 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17114 gcttggctaaaatgtgcattttcagtggtacaaacgaagtacaaatttcatgtatgcttt 17055
Query: 257 tcatttggaattttttttgtgtcggcaatggtgatgatgacagtgtcttcggaagggcga 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17054 tcatttggaattttttttgtgtcggcaatggtgatgatgacagtgtcttcggaagggcga 16995
Query: 317 ctgatatagtcactgagatggtatttactttggccatgaataatggccttggacgtgacg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16994 ctgatatagtcactgagatggtatttactttggccatgaataatggccttggacgtgacg 16935
Query: 377 caactcaatatcagcagtaccaaatgcatccatccgtacagattgaattacagaatctgc 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16934 caactcaatatcagcagtaccaaatgcatccatccgtacagattgaattacagaatctgc 16875
Query: 437 ggagaaagctaagcttgaatgttatttcgaccagcgtgttctctggtatcttaactggta 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16874 ggagaaagctaagcttgaatgttatttcgaccagcgtgttctctggtatcttaactggta 16815
Query: 497 atttccctaccaacatttggatgcatgccaagaaactccttnaatctt-atggangcagg 555
||||||||||||||||||||| |||||||||| ||||| |||||| ||||| |||||
Sbjct: 16814 atttccctaccaacatttggagcaatgccaagaacttcctt-aatcttaatggaggcagg 16756
Query: 556 gatgagttcatgggattggtgaaaagaagcatganagaaatcgacccatttgagttgaag 615
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16755 gatgagttcatgggattggtgaaaagaagcatgaaagaaatcgacccatttgagttgaag 16696
Query: 616 attcataacgttctattcaaactttat-aaatatttgtacttttaatggatctagaagac 674
||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct: 16695 attcataacgttctattcaaaacttataaaatattggtacttttaatggatctagaagac 16636
Query: 675 ttggtgaaaaagggctctcctgggatggacttgatacgtattgaatttaattacaattgc 734
||||||||||||||||||||||||||||||||||||||||| | |||| ||||| | |||
Sbjct: 16635 ttggtgaaaaagggctctcctgggatggacttgatacgtatag-attttattacgaatgc 16577
Query: 735 tattacttgaggcctgaattttaaacttttccatggaattttgaatttcattcggaggtc 794
||| || |||||||| | ||||||||||||||||| |||||| |||||| ||||||||
Sbjct: 16576 tataac-tgaggccttgaatttaaacttttccatgg-attttg-atttca-tcggaggt- 16522
Query: 795 ccaaaatcgtac 806
||||||||||||
Sbjct: 16521 ccaaaatcgtac 16510
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7169
Number of Sequences: 1807
Number of extensions: 7169
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)