BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC41ZC03FM1.SCF screened BAC_end (930 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig680 1203 0.0 >3x_Contig680 Length = 2471 Score = 1203 bits (607), Expect = 0.0 Identities = 680/698 (97%), Gaps = 5/698 (0%) Strand = Plus / Plus Query: 87 cttaatttacaaaggaattttataggaatttcaaaggccaaattgtctatatcatcgcaa 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1579 cttaatttacaaaggaattttataggaatttcaaaggccaaattgtctatatcatcgcaa 1638 Query: 147 accccatactaagatcgcaggatgacttataatctgctttctgttcctttaaacttttgg 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1639 accccatactaagatcgcaggatgacttataatctgctttctgttcctttaaacttttgg 1698 Query: 207 aatattattactacattgtttaaataggaaaaacatgaataatatatacatatccgggta 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1699 aatattattactacattgtttaaataggaaaaacatgaataatatatacatatccgggta 1758 Query: 267 aacttttgtaaaccaattcgttgcacattaatatgaagacaccattatagggacaagtca 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1759 aacttttgtaaaccaattcgttgcacattaatatgaagacaccattatagggacaagtca 1818 Query: 327 tcccactcagtggactaatatcttatctcgtatgctcctgaatgtgagatatatttaatc 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1819 tcccactcagtggactaatatcttatctcgtatgctcctgaatgtgagatatatttaatc 1878 Query: 387 catttcaccggttgataattcaattgtggttcttgacatttcaagtgtctcaccacaagt 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1879 catttcaccggttgataattcaattgtggttcttgacatttcaagtgtctcaccacaagt 1938 Query: 447 ccggaattactaaacattacaatttcgaagcccattgatattggcggtcttgaccatctt 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1939 ccggaattactaaacattacaatttcgaagcccattgatattggcggtcttgaccatctt 1998 Query: 507 aacaaatcagatagatcgtgggaagtagcatggattgccaccttaccgctcagagtattt 566 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1999 aacaaatcagatagatcgtgggaagtagcagggattgccaccttaccgctcagagtattt 2058 Query: 567 tctgtagatcctttgtatttgttgtatttccataccatgcatttttctccggcatcgtac 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2059 tctgtagatcctttgtatttgttgtatttccataccatgcatttttctccggcatcgtac 2118 Query: 627 ttacattttcct-caaagacgtttaaatcgcatttaatcgt-gttgggggcacaagtatt 684 |||||||||||| || ||||||| ||||||||||||||||| |||||||||||| ||||| Sbjct: 2119 ttacattttcctccagagacgttaaaatcgcatttaatcgtggttgggggcacaggtatt 2178 Query: 685 ntaactggtacatctttggccgagacattggatggggaaagggatctttaacg-tacctt 743 |||||| |||||||||||| ||||||||||||||| |||| |||| |||||| |||||| Sbjct: 2179 ttaactgttacatctttggcagagacattggatgggaaaagtgatc-ttaacgttacctt 2237 Query: 744 ggatttgagtgtagatttctt-accatttctacctccg 780 | | ||||||||||| ||||| || ||||||||||||| Sbjct: 2238 gtaattgagtgtagagttcttcacgatttctacctccg 2275 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6677 Number of Sequences: 1807 Number of extensions: 6677 Number of successful extensions: 38 Number of sequences better than 1.0e-20: 1 length of query: 930 length of database: 10,358,551 effective HSP length: 16 effective length of query: 914 effective length of database: 10,329,639 effective search space: 9441290046 effective search space used: 9441290046 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)