BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC03RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1687 1402 0.0
>3x_Contig1687
Length = 12800
Score = 1402 bits (707), Expect = 0.0
Identities = 794/813 (97%), Gaps = 8/813 (0%)
Strand = Plus / Minus
Query: 49 tgagggaatcatcccatgagggcaagaaaagtaagacaaagagatcacataaagatggaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4103 tgagggaatcatcccatgagggcaagaaaagtaagacaaagagatcacataaagatggaa 4044
Query: 109 aagatgagtacacgttgttcttggaaaagaagttgaaatatctagaaaaattagttgaca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4043 aagatgagtacacgttgttcttggaaaagaagttgaaatatctagaaaaattagttgaca 3984
Query: 169 tgaaaccagatacgaactcgtataaagagaaactcagcaaatacaagaaggttgctcatc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3983 tgaaaccagatacgaactcgtataaagagaaactcagcaaatacaagaaggttgctcatc 3924
Query: 229 ttttggacaacggagaacctgatcaggatgatataacaactgtgcttcctcccacggcgg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3923 ttttggacaacggagaacctgatcaggatgatataacaactgtgcttcctcccacggcgg 3864
Query: 289 cacaacaaactgcaccttctaatacacttgctgcttcgctatcacagcagccgaatgggg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3863 cacaacaaactgcaccttctaatacacttgctgcttcgctatcacagcagccgaatgggg 3804
Query: 349 cagcaggggtagctcaggatcaacagataacgaggattaggtcacctatactacctccgc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3803 cagcaggggtagctcaggatcaacagataacgaggattaggtcacctatactacctccgc 3744
Query: 409 ctccgaaaactaagtttttacctctacatcaacagtctcaaaatcaaccacaacgttctg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3743 ctccgaaaactaagtttttacctctacatcaacagtctcaaaatcaaccacaacgttctg 3684
Query: 469 gcatgattaagcctcctcattctcatgaacgagcattggaatccttagcatctgattctc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3683 gcatgattaagcctcctcattctcatgaacgagcattggaatccttagcatctgattctc 3624
Query: 529 tcgaatcaatcgattattcacgttgcattttcgcaaaatacaacttgaaagagttcttgt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3623 tcgaatcaatcgattattcacgttgcattttcgcaaaatacaacttgaaagagttcttgt 3564
Query: 589 catatgatccagctttcgaatttgatgaacaantgagtagagcgtttttggacacctact 648
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3563 catatgatccagctttcgaatttgatgaacaattgagtagagcgtttttggacacctact 3504
Query: 649 ttacaagtaactc-attc-natatccacttctagatgaacaagagatttacactttccac 706
||||||| | || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3503 ttacaag-acttcaattcaaatatccacttctagatgaacaagagatttacactttccac 3445
Query: 707 aatgattatattaataataatgttcactcatattcaatcaatgaattccattttctcctg 766
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3444 aatgattatattaataataatgttcactcatattcaatcaatgaattcca-tttctcctg 3386
Query: 767 tggtagaatgtggttaggttttcaacattttaaccccatttacaacagaccactggaaaa 826
|||||||||||||||| ||||||| || ||| | |||||||||| ||||||||||||||
Sbjct: 3385 tggtagaatgtggtta-gttttcagca-tttcagcccatttacacaagaccactggaaaa 3328
Query: 827 ttccaaggggttgccttcaaataagatatttct 859
| || ||||||||||| ||||| ||||||||||
Sbjct: 3327 tacc-aggggttgcctccaaat-agatatttct 3297
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7238
Number of Sequences: 1807
Number of extensions: 7238
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)