BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC05FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1593 1360 0.0
>3x_Contig1593
Length = 10902
Score = 1360 bits (686), Expect = 0.0
Identities = 784/811 (96%), Gaps = 5/811 (0%)
Strand = Plus / Plus
Query: 91 cccccattcatccacgtttagtgcagatacactaactttgaaatcaacagtattgagttc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7653 cccccattcatccacgtttagtgcagatacactaactttgaaatcaacagtattgagttc 7712
Query: 151 aacgttagtactcatgtaagtgatggatgttaggagcagaaacgtaaatgtcaaatctaa 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7713 aacgttagtactcatgtaagtgatggatgttaggagcagaaacgtaaatgtcaaatctaa 7772
Query: 211 gaacaataacattgcccgaccacctttcccacattgcagatcaccaatgaattgcgtgaa 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7773 gaacaataacattgcccgaccacctttcccacattgcagatcaccaatgaattgcgtgaa 7832
Query: 271 ccagtagccatatttccaccgacacacgtcccgttctatatttattacagaatggtacgc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7833 ccagtagccatatttccaccgacacacgtcccgttctatatttattacagaatggtacgc 7892
Query: 331 caccgatgcaacggtctctagcaacaataacacttgtagtcccctgaaatttctcaacat 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7893 caccgatgcaacggtctctagcaacaataacacttgtagtcccctgaaatttctcaacat 7952
Query: 391 aatcgtccgcatttcttcatgattctctgtcaattctgcatggtatactatcaaaagaga 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7953 aatcgtccgcatttcttcatgattctctgtcaattctgcatggtatactatcaaaagaga 8012
Query: 451 atgtgacaggtagctgaaaaacataagaatcaatgaacttagggcaatagttatcgtttg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8013 atgtgacaggtagctgaaaaacataagaatcaatgaacttagggcaatagttatcgtttg 8072
Query: 511 gtccttcataaaccgtagatagataactgtatacatgaagatcattaatttcccgcanaa 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8073 gtccttcataaaccgtagatagataactgtatacatgaagatcattaatttcccgcaaaa 8132
Query: 571 attagaaacaatcatcttntattttattcgctcactcactaccttacatcatccatccat 630
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 8133 attagaaacaatcatcttttatttcattcgctcactcactaccttacaacatccatccaa 8192
Query: 631 aacacggcagccgaaatatttagaatgtatgatatacaaaggacagcttgtagacaaaca 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8193 aacacggcagccgaaatatttagaatgtatgatatacaaaggacagcttgtagacaaaca 8252
Query: 691 cgttgatcaaactttcactncctagtttgttttctttttcccttttgccttttaaagggt 750
|||||||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 8253 cgttgatcaaacttcaactccctagtttgttttc-ttttcccttttgccatttaaagggt 8311
Query: 751 tacttcatttctcagttcataatattcatactgtgaatttagtttgaacatcgctttttc 810
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8312 tacttca-ttctcagttcataatattcatactgtgaatttagtttgaacatcgc-ttttc 8369
Query: 811 aacatttttggaacttagactcttacttcctaacattttcatgtaaaacgttcaatgagc 870
|||| |||| |||||||||| ||||| || ||| ||||| ||||||||||||||||
Sbjct: 8370 aacaattttcgaacttagacatctactt-ctcacaatttcaatgaaaacgttcaatgagc 8428
Query: 871 ggttttattgaac-attaaccgttgcttttg 900
| ||||||||||| || ||| ||||||||||
Sbjct: 8429 gtttttattgaacaataaactgttgcttttg 8459
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6355
Number of Sequences: 1807
Number of extensions: 6355
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)