BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC05RM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1606 1265 0.0
>3x_Contig1606
Length = 11468
Score = 1265 bits (638), Expect = 0.0
Identities = 713/729 (97%), Gaps = 8/729 (1%)
Strand = Plus / Plus
Query: 47 tcgtgaacaagctgtgtaccagtacttaaattccaaataaatagatgagaattttggttg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tcgtgaacaagctgtgtaccagtacttaaattccaaataaatagatgagaattttggttg 885
Query: 107 gaattaccgactgcagcgattgtgtttgaatgaatttggtctattgtaagtgcgtcccag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gaattaccgactgcagcgattgtgtttgaatgaatttggtctattgtaagtgcgtcccag 945
Query: 167 ttgttaacgtgcacacttggcttgaacgaggtcaccaaatcatgatctgataatttaaat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 ttgttaacgtgcacacttggcttgaacgaggtcaccaaatcatgatctgataatttaaat 1005
Query: 227 aacttaatgacactatcttttgctggaattgcatattggtctcctttattggtccatgca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 aacttaatgacactatcttttgctggaattgcatattggtctcctttattggtccatgca 1065
Query: 287 actctagtgcatgttctgttatcttcgcatagcataggatcaagtccatctatagcgact 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 actctagtgcatgttctgttatcttcgcatagcataggatcaagtccatctatagcgact 1125
Query: 347 gaatcggcgttttcagtattattctcagtgtccgctggtagatcatcattgaagaatatc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 gaatcggcgttttcagtattattctcagtgtccgctggtagatcatcattgaagaatatc 1185
Query: 407 ttatgtagctgatcatgcaatgtgtggattctattgggtgtagtagaacttaaagagtag 466
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 ttaggtagctgatcatgcaatgtgtggattctattgggtgtagtagaacttaaagagtag 1245
Query: 467 aatacaacgttaccgttactgagtgatactgctagaatgttattttgtttgttgtatgat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 aatacaacgttaccgttactgagtgatactgctagaatgttattttgtttgttgtatgat 1305
Query: 527 aaactaaccagttgttcgtccaaagttaatttaacgtttgaatttccctcttctaatgc- 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 aaactaaccagttgttcgtccaaagttaatttaacgtttgaatttccctcttctaatgca 1365
Query: 586 accaatgtcatttctaaatcattcccacctacaacacatactttatcatcatgaactaag 645
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1366 accaatgtcatttctaaatcatccccacctacaacacatactttatcatcatgaactaag 1425
Query: 646 gccaaatcacgcaatgggtacgaggggatct-aagcat-acttgttcttgtttttcagta 703
||||||||||||||||| |||| |||||| |||||| ||||||||||||||| |||||
Sbjct: 1426 gccaaatcacgcaatggtaacga--ggatctaaagcataacttgttcttgttttccagta 1483
Query: 704 cattgtacccagtata-gttgccattgcgggaaatcacatataaa-catcagctgaattt 761
||||||| |||||||| || |||||||||||||| ||||||||| ||||||||||||||
Sbjct: 1484 cattgta-ccagtataggtcgccattgcgggaaacaacatataaaccatcagctgaattt 1542
Query: 762 tgactcaaa 770
|||||||||
Sbjct: 1543 tgactcaaa 1551
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5669
Number of Sequences: 1807
Number of extensions: 5669
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)