BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC06FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 940 0.0
>3x_Contig1738
Length = 21411
Score = 940 bits (474), Expect = 0.0
Identities = 536/554 (96%), Gaps = 2/554 (0%)
Strand = Plus / Plus
Query: 87 ctgctgttatcctagttcctgtctcacatcccaacccagctcccagcttcatctgctttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18926 ctgctgttatcctagttcctgtctcacatcccaacccagctcccagcttcatctgctttc 18985
Query: 147 ccatcgtctcatctctctttccaatcacaccacatataaacttcgtctcgagcttcgatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18986 ccatcgtctcatctctctttccaatcacaccacatataaacttcgtctcgagcttcgatt 19045
Query: 207 ctttgctttttttgtgcagcaccttctatggaaaaagaaagagcaaggctggtgaaaaag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19046 ctttgctttttttgtgcagcaccttctatggaaaaagaaagagcaaggctggtgaaaaag 19105
Query: 267 aaatattcagcatgggaaatctggcgatgtcatctgacactcgtcgcagcccaacagaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19106 aaatattcagcatgggaaatctggcgatgtcatctgacactcgtcgcagcccaacagaaa 19165
Query: 327 acgggtattctagcaagtgtctatggagctaccaccatgcaatacgaagaatcgccgaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19166 acgggtattctagcaagtgtctatggagctaccaccatgcaatacgaagaatcgccgaat 19225
Query: 387 cgtgtttattttgtactgacggtgctttgcatgggtacattttggtatgtatggtctctg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19226 cgtgtttattttgtactgacggtgctttgcatgggtacattttggtatgtatggtctctg 19285
Query: 447 ggacggaataactaaaagtggaacccggaccagatagtatcggaaggatgattgtgatga 506
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19286 ggacggaaaaactaaaagtggaacccggaccagatagtatcggaaggatgattgtgatga 19345
Query: 507 ttatacgttgtgtgggtcaattgggtaggtatggctgttgcattat-tttagac-atatg 564
| ||||||||||||| ||| |||||||||||||||||||||||||| | ||||| |||||
Sbjct: 19346 taatacgttgtgtggttcagttgggtaggtatggctgttgcattatatatagacaatatg 19405
Query: 565 tctcgcccttttttttggttttggttcctttggcctggaccgggtggactacccttaatt 624
||||| ||||||||||| ||||| || ||||||| | ||| || || ||||| |||| ||
Sbjct: 19406 tctcgtccttttttttgtttttgttttctttggcattgactggttgtactactcttattt 19465
Query: 625 gaagagtctcaagg 638
||||||||||||||
Sbjct: 19466 gaagagtctcaagg 19479
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6114
Number of Sequences: 1807
Number of extensions: 6114
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)