BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC06RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig952 1007 0.0
>3x_Contig952
Length = 3817
Score = 1007 bits (508), Expect = 0.0
Identities = 595/614 (96%), Gaps = 8/614 (1%)
Strand = Plus / Minus
Query: 46 gctttaaaaacttgatactgctattctgaatttgattcgactgccaatgcggtaatctgg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 gctttaaaaacttgatactgctattctgaatttgattcgactgccaatgcggtaatctgg 1226
Query: 106 ccgacgaagtgtattcttgactcgttttttccctcgttaaagtttggatgtactggattt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 ccgacgaagtgtattcttgactcgttttttccctcgttaaagtttggatgtactggattt 1166
Query: 166 tgtactgctgaaaagattgtacctttactgttttaaactgtatgtccattgttgtcattt 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1165 tgtactgctgaaaagattgtacctttactgttttaaactgtatgtccattgttgtcatct 1106
Query: 226 ggcgcttcggaagatcataagataaaaactcttcataaagttccgattctcgttgtacca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 ggcgcttcggaagatcataagataaaaactcttcataaagttccgattctcgttgtacca 1046
Query: 286 acctgctatgcattactggaaattcacaagagtgtctaagtgttctccctatcggttgta 345
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 1045 acctgctatgcattactggaaattcacaagagtgtctaagtgttct-cctagcggttgta 987
Query: 346 aaaagtcctcatttaaccgatatttagcatgtacattttgatcgaatttattcaacctaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 aaaagtcctcatttaaccgatatttagcatgtacattttgatcgaatttattcaacctaa 927
Query: 406 cagaaaggtccaactttgttaaggcagcactgaacaaatctttcacattatctctaaact 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 926 cagaaaggtccaactttgttaaggcagcactgaacaaatctttcacattatctct-aact 868
Query: 466 ataatcttttctttgtatagtgatcttgnatctacattctgattgctgttatatggtgcc 525
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 867 ataatcttttctttgtatagtgatcttgtatctacattctgattgctgttatatggtgcc 808
Query: 526 ttgcatttccatttccgatta-tccagggccgaatgtatcc-ttgactaaaattgcantg 583
||||||||||||| | ||||| |||||||||| |||||||| ||||||||||||||| ||
Sbjct: 807 ttgcatttccattccggattattccagggccggatgtatcctttgactaaaattgcagtg 748
Query: 584 gtat-gaatttcatgat-tttttcacc-aagatgatccatttgattcctt-ttgccgact 639
|||| ||||| ||||| | ||||||| |||||||||||||||||||||| |||||||||
Sbjct: 747 gtatcgaattcaatgatatatttcaccaaagatgatccatttgattccttcttgccgact 688
Query: 640 ttgggaaactttaa 653
||| ||||||||||
Sbjct: 687 ttgtgaaactttaa 674
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8259
Number of Sequences: 1807
Number of extensions: 8259
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)