BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC07FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1104 1191 0.0
>3x_Contig1104
Length = 4895
Score = 1191 bits (601), Expect = 0.0
Identities = 632/640 (98%), Gaps = 2/640 (0%)
Strand = Plus / Plus
Query: 87 tgtagtagatacattcaactcacattgcagctgcttcatttcgaacttttatacattctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1866 tgtagtagatacattcaactcacattgcagctgcttcatttcgaacttttatacattctt 1925
Query: 147 tcaataataacaaggatacatatatacataatatgcgtgtcattcggaaccaatttaaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1926 tcaataataacaaggatacatatatacataatatgcgtgtcattcggaaccaatttaaat 1985
Query: 207 acaaaatatttaaaagaaggaaataaggattttcattcaagtatccaacggttcttcgtg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1986 acaaaatatttaaaagaaggaaataaggattttcattcaagtatccaacggttcttcgtg 2045
Query: 267 gaaaagatatcgtctattgctgatgaaaagacgatatctactattgtctttaagtcacga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2046 gaaaagatatcgtctattgctgatgaaaagacgatatctactattgtctttaagtcacga 2105
Query: 327 cgcaggaaatagtaacttgttacccggccaaagcatatttcaaagattgacgatgattct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2106 cgcaggaaatagtaacttgttacccggccaaagcatatttcaaagattgacgatgattct 2165
Query: 387 aaaagtaacattgaatcatgtcgtggagcttaaatacaggtaacgacagtgatgaataca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2166 aaaagtaacattgaatcatgtcgtggagcttaaatacaggtaacgacagtgatgaataca 2225
Query: 447 catcgattgtagcggttttggcttctattaagtgctgtgatcgaagttcatatttattag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2226 catcgattgtagcggttttggcttctattaagtgctgtgatcgaagttcatatttattag 2285
Query: 507 agcatcagtagtcatgtcacaatcggcaggtgtttccagaccgaagccctgggagcagaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 agcatcagtagtcatgtcacaatcggcaggtgtttccagaccgaagccctgggagcagaa 2345
Query: 567 aaatggagttgagagtttaggaactgatgccagttttactgagaatagcagtgcgttgca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 aaatggagttgagagtttaggaactgatgccagttttactgagaatagcagtgcgttgca 2405
Query: 627 cccatctggntatcagcctgacttaccattcaaaccgaacgggttaaaatgagggtatgg 686
|||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||||
Sbjct: 2406 accatctggtaatcagcctgacttaccatccaaaccgaac-ggtttaaatgagggtatgg 2464
Query: 687 attctttgaacggggggaaacccttttcgaaatggtatgt 726
||||||||||| |||||||||||| |||||||||||||||
Sbjct: 2465 attctttgaac-gggggaaaccctcttcgaaatggtatgt 2503
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7073
Number of Sequences: 1807
Number of extensions: 7073
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)