BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC07RM1.SCF screened BAC_end
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig782 1130 0.0
>3x_Contig782
Length = 2529
Score = 1130 bits (570), Expect = 0.0
Identities = 628/640 (98%), Gaps = 7/640 (1%)
Strand = Plus / Minus
Query: 44 gctttattcgtggcatgtttcattgccgatgatgctatcgccaagaataccatagatttg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 gctttattcgtggcatgtttcattgccgatgatgctatcgccaagaataccatagatttg 2125
Query: 104 ttgctaagctcagaaattttgtatttcacctccaatgatattaaaccaattttggaaaga 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 ttgctaagctcagaaattttgtatttcacctccaatgatattaaaccaattttggaaaga 2065
Query: 164 ttacagatttcagctccaataatccatcgtcatctggcactatacgagaagtactttggc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2064 ttacagatttcagctccaataatccatcgtcatctggcactatacgagaagtactctggc 2005
Query: 224 gaccatctttccgaagtaagtaatttgttgaaagcaggcgactttaaggaggcggaacta 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2004 gaccatctttccgaagtaagtaatttgttgaaagcaggcgactttaaggaggcggaacta 1945
Query: 284 gtcaccattactaccgtaggtccaaagttaataatcaatgccaaatggaataacgattac 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1944 gtcaccattactaccgtaggtccaaagttaataatcaatgccaaatggaataacgattac 1885
Query: 344 ttatcagttttggaaacactgttgcaaaggtttccttcgcacaccatcccaacttgggaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 ttatcagttttggaaacactgttgcaaaggtttccttcgcacaccatcccaacttgggaa 1825
Query: 404 aaaggattgggtgtatatgaaaagtacatcaagctctcactacacaactccctcgatcct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 aaaggattgggtgtatatgaaaagtacatcaagctctcactacacaactccctcgatcct 1765
Query: 464 aatatcatccatcagcttatcaacacattacccaacctatgcanagactattcacatcat 523
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1764 aatatcatccatcagcttatcaacacattacccaacctatgcaaagactattcacatcat 1705
Query: 524 gaattagtgaacgttgcaagctctcgtatctctgaagctgtcagtgaattgtttttgatc 583
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1704 gaattagtgaacgttgcaagctctcgtatctctgaggctgtcagtgaattgtttttgatc 1645
Query: 584 aacctcaacatgttatcaag-aaaatccc-aaagagagcctgctttcttta-catttagt 640
|||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| ||
Sbjct: 1644 aacctcaacatgttatcaagaaaaatcccaaaagagagcctgctttctttaccattaggt 1585
Query: 641 caaccgg-atcaaattact--aagaaagtg-tgtcctcat 676
||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 1584 caaccggaatcaaattacttaaagaaagtgttgtcctcat 1545
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6313
Number of Sequences: 1807
Number of extensions: 6313
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)