BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC08FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1092 0.0
>3x_Contig1652
Length = 14842
Score = 1092 bits (551), Expect = 0.0
Identities = 637/661 (96%), Gaps = 4/661 (0%)
Strand = Plus / Minus
Query: 86 aacggatctcgataattgtttcattgtctaacttgtgtagagagcaagttattgaaaaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823 aacggatctcgataattgtttcattgtctaacttgtgtagagagcaagttattgaaaaag 4764
Query: 146 tttaggagagaccgaaaagaggaaatatttaacaatgctttctagtataagaccgggtac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4763 tttaggagagaccgaaaagaggaaatatttaacaatgctttctagtataagaccgggtac 4704
Query: 206 cgtggttctatctcgtactttcaagcagagcttggctagctataggggtgttactgctgt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4703 cgtggttctatctcgtactttcaagcagagcttggctagctataggggtgttactgctgt 4644
Query: 266 tagtttgtattctacaaataattctgcacaaaagtccgattcaaccaaagaaaccacatc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4643 tagtttgtattctacaaataattctgcacaaaagtccgattcaaccaaagaaaccacatc 4584
Query: 326 cactgaaaagggcaaaagcgttgcaccagaagacgttagaactaagagacgtgaattatc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4583 cactgaaaagggcaaaagcgttgcaccagaagacgttagaactaagagacgtgaattatc 4524
Query: 386 cagttccaagtacgaatctgcatcatatcaacttccaaaatggaaagaagctcttggtga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4523 cagttccaagtacgaatctgcatcatatcaacttccaaaatggaaagaagctcttggtga 4464
Query: 446 atttgttattagtacgcttaatttggatatggataaagttagagccggtccaattgctgg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4463 atttgttattagtacgcttaatttggatatggataaagttagagccggtccaattgctgg 4404
Query: 506 ttcatactattactcgatctgntaagaacaaagtcttcaatatgatgatgaaccactttc 565
||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct: 4403 ttcatactattactcgatctgtaaagaacaaggtcttcaatatgaggatgaaccactttc 4344
Query: 566 taagacagccaagttcttttacgatgatttgaagnttgccaaagacattctcccaatggt 625
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 4343 taagacagccaagttcttttacgaggatttgaag-ttgccaaagacattctcccaatggt 4285
Query: 626 tccaaaatactatcctacatgaatgggatgttattcgtgagaatganaactttgccggtc 685
||||| ||||||||||||||||| ||||||||||||||||||||| | || ||||| ||
Sbjct: 4284 accaaattactatcctacatgaat-ggatgttattcgtgagaatgagagctatgccgttc 4226
Query: 686 aaattccggcaggatttttagcagaagttgggtggattagaacatttggcgatttcgaaa 745
|||| | | || ||| | |||||||||| |||||| ||||||||||| |||| ||||||
Sbjct: 4225 aaatacggcaagaattatcagcagaagtt-ggtgga-tagaacatttgccgatatcgaaa 4168
Query: 746 a 746
|
Sbjct: 4167 a 4167
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7603
Number of Sequences: 1807
Number of extensions: 7603
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)