BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC41ZC08RM1.SCF screened BAC_end (917 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1261 1104 0.0 >3x_Contig1261 Length = 9103 Score = 1104 bits (557), Expect = 0.0 Identities = 669/693 (96%), Gaps = 12/693 (1%) Strand = Plus / Minus Query: 44 gcttgagttattatcagcacagcaccagcatcggcatcagcaccagcatcagcaccacag 103 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2234 gcttgagttattatcagcacagcaccagcatcggcatcagcaccagcatcagcaccacag 2175 Query: 104 ttatacctcaatgagtaccggtaccgatggtttccagaaaagtggtaaatccaaatcaaa 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2174 ttatacctcaatgagtaccggtaccgatggtttccagaaaagtggtaaatccaaatcaaa 2115 Query: 164 ttccaattctatcaaggtacgatctttcgatgagcaaatagatgaggctagaaatgctat 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2114 ttccaattctatcaaggtacgatctttcgatgagcaaatagatgaggctagaaatgctat 2055 Query: 224 tcgtggaagcgaattattacagagcttacatcaatcactaactccattccaggttacaca 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2054 tcgtggaagcgaattattacagagcttacatcaatcactaactccattccaggttacaca 1995 Query: 284 tgtacgatgtcttgcgctaggtaatttccatcaagatttccctgctaggtttcaattggc 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1994 tgtacgatgtcttgcgctaggtaatttccatcaagatttccctgctaggtttcaattggc 1935 Query: 344 gcttttgttagaacttctctatttgttgaaaagtatcgagatgctcattttatgatcctg 403 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1934 gcttttgttagaacttctctatttgttg-aaagtatcgagatgctcattttatgatcctg 1876 Query: 404 tctttgacgatgaagacttggcatatattaacggtaatggctctttggtcagtagacgaa 463 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1875 tctttgacgatgaagacttggcatatattaacggtaatggctc-ttggtcagtagacgaa 1817 Query: 464 tcttcgccattctgggacgtaaatcc-agccagattatgttctttctaccacacgctccg 522 ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1816 tcttcgccattcttggacgtaaatccaagccagattatgttctttctaccacacgctccg 1757 Query: 523 ttagacctaac-gnaaaggttatagcagaag-atcacc-aaagtttggttagctaatcat 579 ||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct: 1756 ttagacctaacggaaaaggttatagcagaagaatcaccaaaagtttggttagctaatcat 1697 Query: 580 ttattancacatactgacaggntgacaaaggtac-attatacgataaatatcctt--ata 636 |||||| ||||||||||||| |||||||||||| |||||||||||||||||||| || Sbjct: 1696 ttattacaacatactgacaggttgacaaaggtacaattatacgataaatatcctttatta 1637 Query: 637 tgcaaaatggtcatttatttcatttctaac-cagctactaagattcggtcagcaacagat 695 |||||| |||||| |||| ||| ||||||| ||||||||||||| ||||||||||||||| Sbjct: 1636 tgcaaattggtcaattatatcaattctaacacagctactaagatccggtcagcaacagat 1577 Query: 696 actgatgaagaatggggttcaaaccttttacat 728 |||||||||| ||||| |||||| ||||||||| Sbjct: 1576 actgatgaag-atgggtttcaaa-cttttacat 1546 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6853 Number of Sequences: 1807 Number of extensions: 6853 Number of successful extensions: 48 Number of sequences better than 1.0e-20: 1 length of query: 917 length of database: 10,358,551 effective HSP length: 16 effective length of query: 901 effective length of database: 10,329,639 effective search space: 9307004739 effective search space used: 9307004739 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)