BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC09FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig846 1322 0.0
>3x_Contig846
Length = 2695
Score = 1322 bits (667), Expect = 0.0
Identities = 712/726 (98%), Gaps = 1/726 (0%)
Strand = Plus / Minus
Query: 89 tacccaagtattttcgacggaaatacgatttctattattataagagtcatcagcgcatag 148
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2389 tacccaagtattttcgacggaaatacgatttctgttattataagagtcatcagcgcatag 2330
Query: 149 aacacacatcagccggaattagagatgctacgtgcatgtggttgggtatatacgtgcgaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 aacacacatcagccggaattagagatgctacgtgcatgtggttgggtatatacgtgcgaa 2270
Query: 209 cggcgggaataactacgccagtatgtccgtttcccatggaaaagttaaaagcagttagat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 cggcgggaataactacgccagtatgtccgtttcccatggaaaagttaaaagcagttagat 2210
Query: 269 tcatcgaaaacgcaatagaggctactaatgcccctcgctattgccaaacgaccttaatgg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 tcatcgaaaacgcaatagaggctactaatgcccctcgctattgccaaacgaccttaatgg 2150
Query: 329 tcaaacattaggttagggttccagttattctttctgcctgttattgttcaaattgacaaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2149 tcaaacattaggttagggttccagttattctttctgcctgttattgttcaaattgacaaa 2090
Query: 389 tcacagggagcttgtttagcacatttgtatttccattccttttgctcatgtgtcaccttc 448
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2089 tcacagggagcttgtttagcacatttgtatttccattccttttgctcaggtgtcaccttc 2030
Query: 449 gagcaaattcctgtattactaagtaaatatatgtaataataatgtattacgaaagagaaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 gagcaaattcctgtattactaagtaaatatatgtaataataatgtattacgaaagagaaa 1970
Query: 509 aaaagaaaccggatggaaaggatggattttttttagcagccattccatcgcttgaaagca 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 aaaagaaaccggatggaaaggatggattttttttagcagccattccatcgcttgaaagca 1910
Query: 569 gctgtccctacagaaattactaagctcacaattgcaatcctaattcttgactatagattt 628
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1909 gctgtccctacagaaattactaagctcacaattgcaatcctaattcttgactattgattt 1850
Query: 629 gaaatagcctcgtcccctcctgttatttcggcacaatttccatccctaagacggttttca 688
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 1849 gaaatagcctcgtcccctcctgtaatttcggcacaattcccatccctaagacggtttcca 1790
Query: 689 tcgatttgaaatattcaccttttattattgttccttanagatgttttcgatgccgggaaa 748
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 1789 tcgatttgaaatattcaccttttattattgttccttagagatgttttcgatgccggaaaa 1730
Query: 749 aatt-attaacacgccaacaaacttatcctgatgtagctttgcttagtaattgtaacaaa 807
|||| || ||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 1729 aattaataaacacgccaacaaactttatctgatgtagctttgctaagtaattgtaacaaa 1670
Query: 808 gttcaa 813
||||||
Sbjct: 1669 gttcaa 1664
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6666
Number of Sequences: 1807
Number of extensions: 6666
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)